View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19409_low_40 (Length: 304)
Name: NF19409_low_40
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_low_40 |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 39439408 - 39439695
Alignment:
| Q |
1 |
taaataagagtgacttgaaaaaggttcagagtaccaaacaattgtctcgtgtgtttgataatacgatcaatagtttgtagagaacgacatcaaactctag |
100 |
Q |
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||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39439408 |
taaataagaatgacttgaaaaaggctcggagtaccaaacaattgtctcgtgtgtttgataatacgatcaatagtttgtagaggacgacatcaaactctag |
39439507 |
T |
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| Q |
101 |
ggaaatagtattcaaacgtgaatacacatatatgaacgaccaattgtttgattagattttataagaaaacccccaatttcttgtattaagtacataaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39439508 |
ggaaatagtattcaaacgtgaatacacatatatgaacgaccaattgtttgattagattttataagaaaacccccaatttcttgtattaagtacataaatt |
39439607 |
T |
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| Q |
201 |
t---atcacataattgaatttaacataggaaaatccccacataattggaagatggaagccaaaagaaatgaagaaatcaagatcgagc |
285 |
Q |
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| T |
39439608 |
tatcatcacataattgaatttaacataggaaaatccccacataattggaagatggaagccaaaagaaatgaagaaatcaagatcgagc |
39439695 |
T |
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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 20132609 - 20132526
Alignment:
| Q |
1 |
taaataagagtgacttgaaaaaggttcagagtaccaaacaattgtctcgtgtgtttgataatacgatcaatagtttgtagagaac |
85 |
Q |
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| T |
20132609 |
taaataagagtggcttgaaaagggt-cggagtaccaaacaagtgtctcgtgtgtatgacattatgatcaatagtctgtagagaac |
20132526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 2878289 - 2878223
Alignment:
| Q |
19 |
aaaaggttcagagtaccaaacaattgtctcgtgtgtttgataatacgatcaatagtttgtagagaac |
85 |
Q |
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| T |
2878289 |
aaaaggctcagagtaccaaacaaatgcctcgtgtgtatgaaaatacgaccaatagtctgtagagaac |
2878223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 40514 - 40580
Alignment:
| Q |
19 |
aaaaggttcagagtaccaaacaattgtctcgtgtgtttgataatacgatcaatagtttgtagagaac |
85 |
Q |
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| T |
40514 |
aaaaggctcagagtaccaaacaagtgcctcgtgtgtatgaaaatacggccaatagtctgtagagaac |
40580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 9346381 - 9346447
Alignment:
| Q |
19 |
aaaaggttcagagtaccaaacaattgtctcgtgtgtttgataatacgatcaatagtttgtagagaac |
85 |
Q |
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| T |
9346381 |
aaaaggctcagagtaccaaacaagtgcctcgtgtgtatgacaatacgaccaatagactgtagagaac |
9346447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 14796808 - 14796730
Alignment:
| Q |
1 |
taaataagagtgacttgaaaaaggttcagagtaccaaacaattgtctcgtgtgtttgataatacgatcaatagtttgtag |
80 |
Q |
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| T |
14796808 |
taaataaggatgacttgaaaacgct-caaagtatcaaacaagtgtctcgtgtgtatgataatacgaccaatagtgtgtag |
14796730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 14805682 - 14805604
Alignment:
| Q |
1 |
taaataagagtgacttgaaaaaggttcagagtaccaaacaattgtctcgtgtgtttgataatacgatcaatagtttgtag |
80 |
Q |
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| T |
14805682 |
taaataaggatgacttgaaaacgct-caaagtatcaaacaagtgtctcgtgtgtatgataatacgaccaatagtgtgtag |
14805604 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 23690248 - 23690314
Alignment:
| Q |
19 |
aaaaggttcagagtaccaaacaattgtctcgtgtgtttgataatacgatcaatagtttgtagagaac |
85 |
Q |
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|||||| |||||||||||||||| || || |||||| ||| |||| || ||||||| |||||||||| |
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| T |
23690248 |
aaaaggctcagagtaccaaacaagtgcctggtgtgtatgaaaatatgaccaatagtctgtagagaac |
23690314 |
T |
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