View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19409_low_41 (Length: 301)
Name: NF19409_low_41
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 118 - 285
Target Start/End: Original strand, 22422587 - 22422752
Alignment:
| Q |
118 |
tgatcaagttgtattcatatagttaatttgatataagaattattgtaatatcttctttatgagagttatatatatatgaccgaacttgcattacttagat |
217 |
Q |
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| T |
22422587 |
tgatcaagttgtattcatatagttaatttgatataagaattattgtaatatcttctttatgagagttata--tatatgaccgaacttgcattacttagat |
22422684 |
T |
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| Q |
218 |
acaaattcactgttgtagttcgcccgattgtggtactttgtctttggttaaatggacaatctggagac |
285 |
Q |
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| T |
22422685 |
acaaattcactgttgtagttcgcccgattgtggtactttgtctttggttaaatggacaatctggagac |
22422752 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 27174348 - 27174443
Alignment:
| Q |
1 |
aaatctgacaatcaattttatgggaatgaacac--aacatattaatagagatagaaaaaacctcattggagtaactttcaaccttggtccttcaatc |
95 |
Q |
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|||||||| ||||||||| | | |||| ||||| || | ||||| ||||||||||||||| |||||| ||||||||||||||| |||||||||||| |
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| T |
27174348 |
aaatctgagaatcaatttcaagagaataaacactgaagaaattaacagagatagaaaaaac-tcattgcagtaactttcaacctcggtccttcaatc |
27174443 |
T |
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