View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19409_low_42 (Length: 299)
Name: NF19409_low_42
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 289
Target Start/End: Original strand, 37183546 - 37183819
Alignment:
| Q |
16 |
tttatttcatcaacctgatcaatcttggttttcaggacttcttctctggtgtttttaacattcttttcgtccaaatctgatataattccacagatcatct |
115 |
Q |
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| T |
37183546 |
tttatttcatcaacctgatcaatcttggttttcaggacttcttctctggtgtttttaacattcttttcgtccaaatctgatataattccacagatcatct |
37183645 |
T |
|
| Q |
116 |
ccaacaacactgaacggaattttacagactttgccaagcaattcttagcaatatctccatgcttaccgataatttttcttaacatcggcataaattccgg |
215 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37183646 |
ccaacaacaccgaacggaattttacagactttgccaagcaattcttagcaatatctccatgcttaccgataatttttcttaacatcggcataaattccgg |
37183745 |
T |
|
| Q |
216 |
tttcacttggtatccattgatcgtatcctcaggccggctttgtacatttgaatcaacctcatcaccatcttcat |
289 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37183746 |
tttcacttggtatccattaatcgtatcctcaggccggcttcgtacatttgaatcaacctcatcaccatcttcat |
37183819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 289
Target Start/End: Original strand, 37194678 - 37194951
Alignment:
| Q |
16 |
tttatttcatcaacctgatcaatcttggttttcaggacttcttctctggtgtttttaacattcttttcgtccaaatctgatataattccacagatcatct |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37194678 |
tttatttcatcaacctgatcaatcttggttttcaggacttcttctctggtgtttttaacattcttttcgtccaaatctgatataattccacagatcatct |
37194777 |
T |
|
| Q |
116 |
ccaacaacactgaacggaattttacagactttgccaagcaattcttagcaatatctccatgcttaccgataatttttcttaacatcggcataaattccgg |
215 |
Q |
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| T |
37194778 |
ccaacaacaccgaacggaattttacagactttgccaagcaattcttagcaatatctccatgcttaccgataatttttcttaacatcggcataaattccgg |
37194877 |
T |
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| Q |
216 |
tttcacttggtatccattgatcgtatcctcaggccggctttgtacatttgaatcaacctcatcaccatcttcat |
289 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37194878 |
tttcacttggtatccattaatcgtatcctcaggccggcttcgtacatttgaatcaacctcatcaccatcttcat |
37194951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 94 - 255
Target Start/End: Original strand, 37202695 - 37202856
Alignment:
| Q |
94 |
gatataattccacagatcatctccaacaacactgaacggaattttacagactttgccaagcaattcttagcaatatctccatgcttaccgataatttttc |
193 |
Q |
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||||| |||||||| || |||||||||||| |||||||| ||| || ||||||| ||| ||||| |||||||||||||| ||||| | ||| |||||| |
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| T |
37202695 |
gatatgattccacaaattatctccaacaacgctgaacggcctttcactgactttgtcaaacaattattagcaatatctccgtgcttgctgattatttttg |
37202794 |
T |
|
| Q |
194 |
ttaacatcggcataaattccggtttcacttggtatccattgatcgtatcctcaggccggctt |
255 |
Q |
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||| || ||||| |||||| | |||||||| |||||||| ||||| ||||||||||||||| |
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| T |
37202795 |
ctaatatgggcatgaattcctgcttcacttgatatccattaatcgtttcctcaggccggctt |
37202856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 78 - 279
Target Start/End: Original strand, 37212051 - 37212252
Alignment:
| Q |
78 |
cttttcgtccaaatctgatataattccacagatcatctccaacaacactgaacggaattttacagactttgccaagcaattcttagcaatatctccatgc |
177 |
Q |
| |
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||||| ||||||||||||||| ||| |||||||| | ||||| || ||||||| ||||| || ||||||| || |||||||| | |||||||||||| |
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| T |
37212051 |
ctttttgtccaaatctgatattatttcacagatcgtatccaagaaagctgaacgaaatttcaccgactttgtcacacaattcttggtaatatctccatgt |
37212150 |
T |
|
| Q |
178 |
ttaccgataatttttcttaacatcggcataaattccggtttcacttggtatccattgatcgtatcctcaggccggctttgtacatttgaatcaacctcat |
277 |
Q |
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|| ||||||||||||||||| |||| ||||||||| || |||||||| ||| ||| | | | ||||||||| ||||||| | | ||||||||||||| |
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| T |
37212151 |
ttgccgataatttttcttaatatcgacataaattctggcttcacttgatatatattaaccatgtcctcaggctggctttgcatttcagaatcaacctcat |
37212250 |
T |
|
| Q |
278 |
ca |
279 |
Q |
| |
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|| |
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| T |
37212251 |
ca |
37212252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 37180587 - 37180684
Alignment:
| Q |
99 |
aattccacagatcatctccaacaacactgaacggaattttacagactttgccaagcaattcttagcaatatctccatgcttaccgataatttttcttaa |
197 |
Q |
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|||||||||||| ||||||||||| |||||| ||| || ||||||| || || |||||||| |||||||||||||| | ||||||||||||||| |
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| T |
37180587 |
aattccacagatgatctccaacaatttcgaacggtttttcaccgactttgtcacaca-ttcttagctatatctccatgcttgctgataatttttcttaa |
37180684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 7527711 - 7527817
Alignment:
| Q |
91 |
tctgatataattccacagatcatctccaacaacactgaacggaattttacagactttgccaagcaattcttagcaatatctccatgcttaccgataattt |
190 |
Q |
| |
|
||||| || ||| |||||||||| |||||||| ||| ||||||| |||| |||||| ||||||||| ||||||||||||||||| ||||||| || |
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| T |
7527711 |
tctgaaatgatttcacagatcattcccaacaacgctgcacggaatcttaccaactttgaagtgcaattcttcgcaatatctccatgcttgccgataactt |
7527810 |
T |
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| Q |
191 |
ttcttaa |
197 |
Q |
| |
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||||||| |
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| T |
7527811 |
ttcttaa |
7527817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 207
Target Start/End: Complemental strand, 414167 - 414034
Alignment:
| Q |
74 |
cattcttttcgtccaaatctgatataattccacagatcatctccaacaacactgaacggaattttacagactttgccaagcaattcttagcaatatctcc |
173 |
Q |
| |
|
||||||||| |||||| |||| ||| ||| |||| || |||||| |||| ||||||||| || ||| |||||| | ||| ||||| |||||||||| |
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| T |
414167 |
cattctttttgtccaactctgctatgatttcacaaattgcctccaagaacaatgaacggaacttcacaaactttgtcgtgcagttcttcacaatatctcc |
414068 |
T |
|
| Q |
174 |
atgcttaccgataatttttcttaacatcggcata |
207 |
Q |
| |
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|||||| ||||| ||||||||||| | ||||||| |
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| T |
414067 |
atgcttgccgatgatttttcttaataccggcata |
414034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 289
Target Start/End: Complemental strand, 5366948 - 5366813
Alignment:
| Q |
154 |
caattcttagcaatatctccatgcttaccgataatttttcttaacatcggcataaattccggtttcacttggtatccattgatcgtatcctcaggccggc |
253 |
Q |
| |
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|||||||||| ||||| || |||||| | | ||||||||||||| || ||||| ||||| || ||||||| ||||| || | ||| || |||||| ||| |
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| T |
5366948 |
caattcttagaaatatatcaatgcttgctggtaatttttcttaatataggcatgaattctggcttcacttcgtatcgataaaccgtgtcttcaggctggc |
5366849 |
T |
|
| Q |
254 |
tttgtacatttgaatcaacctcatcaccatcttcat |
289 |
Q |
| |
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||||||| | |||| |||| |||||||||| |||| |
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|
| T |
5366848 |
tttgtacttccgaatgaaccccatcaccatcatcat |
5366813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 5365232 - 5365154
Alignment:
| Q |
154 |
caattcttagcaatatctccatgcttaccgataatttttcttaacatcggcataaattccggtttcacttggtatccat |
232 |
Q |
| |
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|||||||||| ||||| ||||||||| |||||||||||||||| || ||||| ||||| || ||||||| ||||||| |
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| T |
5365232 |
caattcttagaaatatatccatgcttgtcgataatttttcttaatataggcatgaattctggcttcactttatatccat |
5365154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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