View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19409_low_43 (Length: 290)

Name: NF19409_low_43
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19409_low_43
NF19409_low_43
[»] chr6 (19 HSPs)
chr6 (11-275)||(32960707-32960971)
chr6 (12-266)||(29152104-29152355)
chr6 (12-275)||(32744835-32745095)
chr6 (12-266)||(29131160-29131411)
chr6 (12-266)||(34281770-34282021)
chr6 (12-169)||(29124094-29124251)
chr6 (12-266)||(29299930-29300181)
chr6 (12-165)||(29012782-29012935)
chr6 (12-169)||(34278422-34278579)
chr6 (14-169)||(29137228-29137383)
chr6 (35-266)||(29145148-29145376)
chr6 (12-146)||(32740689-32740823)
chr6 (211-266)||(23218766-23218821)
chr6 (212-266)||(25528980-25529034)
chr6 (212-266)||(26090880-26090934)
chr6 (86-266)||(34258303-34258480)
chr6 (196-273)||(29123966-29124043)
chr6 (227-264)||(29012686-29012723)
chr6 (234-262)||(34278641-34278669)
[»] scaffold0054 (2 HSPs)
scaffold0054 (12-266)||(39793-40044)
scaffold0054 (12-266)||(33442-33693)
[»] chr4 (15 HSPs)
chr4 (48-169)||(37897891-37898012)
chr4 (12-169)||(9581957-9582114)
chr4 (12-169)||(9587652-9587809)
chr4 (12-266)||(54295055-54295306)
chr4 (12-259)||(9602559-9602797)
chr4 (12-169)||(9569138-9569295)
chr4 (15-266)||(9593753-9594001)
chr4 (211-266)||(37895833-37895888)
chr4 (31-109)||(20426618-20426696)
chr4 (233-266)||(9569044-9569077)
chr4 (211-264)||(9574177-9574230)
chr4 (23-96)||(42449820-42449893)
chr4 (232-266)||(9582174-9582208)
chr4 (232-266)||(9587869-9587903)
chr4 (36-96)||(48741982-48742042)
[»] scaffold0134 (1 HSPs)
scaffold0134 (27-264)||(16215-16449)
[»] scaffold0613 (1 HSPs)
scaffold0613 (20-267)||(48-292)
[»] chr1 (3 HSPs)
chr1 (28-109)||(368801-368882)
chr1 (33-110)||(361882-361959)
chr1 (14-110)||(51874684-51874780)
[»] chr7 (6 HSPs)
chr7 (12-96)||(42446356-42446440)
chr7 (144-263)||(7793675-7793791)
chr7 (50-107)||(5438313-5438370)
chr7 (50-107)||(5447289-5447346)
chr7 (42-96)||(45866871-45866925)
chr7 (234-266)||(42446190-42446222)
[»] chr2 (5 HSPs)
chr2 (12-109)||(7488727-7488824)
chr2 (29-116)||(7524043-7524130)
chr2 (22-110)||(7498877-7498965)
chr2 (35-109)||(44937793-44937867)
chr2 (35-96)||(44912517-44912578)
[»] chr5 (9 HSPs)
chr5 (48-106)||(31789523-31789581)
chr5 (12-106)||(42629603-42629697)
chr5 (46-106)||(40545118-40545178)
chr5 (40-96)||(40549288-40549344)
chr5 (27-109)||(42564959-42565041)
chr5 (48-96)||(32032882-32032930)
chr5 (14-72)||(32642992-32643050)
chr5 (39-109)||(43322798-43322868)
chr5 (48-109)||(42637359-42637420)
[»] chr3 (1 HSPs)
chr3 (48-96)||(5162463-5162511)
[»] scaffold0129 (2 HSPs)
scaffold0129 (48-108)||(10482-10542)
scaffold0129 (39-110)||(33551-33622)
[»] chr8 (2 HSPs)
chr8 (36-96)||(12652279-12652339)
chr8 (48-96)||(24466341-24466389)


Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 275
Target Start/End: Original strand, 32960707 - 32960971
Alignment:
Q  11 cataggacgctcaacacaaggcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagtc 110  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  32960707 cataggacgctcaacacaaggcaatggtctaacaataaagagtttgatccaagattccttcataccgatttcatccaaaattgatacatgaaaagtagtc 32960806  T
Q  111 gtctcttcaatgtgtgagaacaatgcaatggacccatttagcaccgccaagtttatccatgatgctttaaatttaaaacaatcatcatcttcatccgagt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32960807 gtctcttcaatgtgtgagaacaatgcaatggacccatttagcaccgccaagtttatccatgatgctttaaatttaatacaatcatcatcttcatccgagt 32960906  T
Q  211 gtatgggtgttacaaggaacacctcattgctcaagtaaaatgataccaaacatggttgaaatggg 275  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32960907 gtatgggtgttacaaggaacacctcattgctcaaataaaatgataccaaacatggttgaaatggg 32960971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 12 - 266
Target Start/End: Original strand, 29152104 - 29152355
Alignment:
Q  12 ataggacgctcaacacaaggcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagtcg 111  Q
    ||||||||||||||  ||||||| |||||||| || |||||||||||||| |||||  | | ||| | || |||||||||||||||| ||||||||||||    
T  29152104 ataggacgctcaacgtaaggcaacggtccaaccatgaagagtttgatccacgattctctgaaaccgagttgacccaaaattgatacacgaaaagtagtcg 29152203  T
Q  112 tctcttcaatgtgtgagaacaatgcaatggacccatttagcaccgccaagtttatccatgatgctttaaatttaaaacaatcatcatcttcatccgagtg 211  Q
    |||||||| | | ||||| |||||| ||||||||||||| |||  |||||||||||||   ||||||||  | ||||||    |||||| | || | | |    
T  29152204 tctcttcattatatgagatcaatgctatggacccatttaacacacccaagtttatccactttgctttaacatcaaaaca---gtcatctacgtctgggag 29152300  T
Q  212 tatgggtgttacaaggaacacctcattgctcaagtaaaatgataccaaacatggt 266  Q
    ||||||||||   ||| |||| |||||||||||||||||||||||||||||||||    
T  29152301 tatgggtgttgtgagggacacttcattgctcaagtaaaatgataccaaacatggt 29152355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 275
Target Start/End: Original strand, 32744835 - 32745095
Alignment:
Q  12 ataggacgctcaacacaaggcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagtcg 111  Q
    ||||| || ||||| |||||||||||||||| | | ||||| ||| |||| ||||| ||||||||||| ||||||| ||||||||  |||||||||||||    
T  32744835 ataggccgatcaacgcaaggcaatggtccaatagtgaagagattggtccatgattctttcataccaatctcacccataattgatatgtgaaaagtagtcg 32744934  T
Q  112 tctcttcaatgtgtgagaacaatgcaatggacccatttagcaccgccaagtttatccatgatgctttaaatttaaaacaatcatcatcttcatccgagtg 211  Q
    ||| ||||   | ||||| |||||||||||||||||||| ||||||||||||| ||||    | || ||  | |||| |||||||   | |||| ||| |    
T  32744935 tcttttcataatatgagatcaatgcaatggacccatttaacaccgccaagtttctccaattggtttcaacatcaaaagaatcatc---tacatctgaggg 32745031  T
Q  212 tatgggtgttacaaggaacacctcattgctcaagtaaaatgataccaaacatggttgaaatggg 275  Q
    || ||||||||  | |||| | || |||||||||||||| ||||||||||  ||||||||||||    
T  32745032 tacgggtgttatgaagaacccttctttgctcaagtaaaacgataccaaactaggttgaaatggg 32745095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 29131411 - 29131160
Alignment:
Q  12 ataggacgctcaacacaaggcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagtcg 111  Q
    |||||||||||||| | || ||||||||||||||| ||||  ||| |||| ||||| || || |||| |||||||||||||||||  ||||||||||| |    
T  29131411 ataggacgctcaacgccagacaatggtccaacaatgaagatcttggtccacgattcttttatgccaaattcacccaaaattgatatgtgaaaagtagttg 29131312  T
Q  112 tctcttcaatgtgtgagaacaatgcaatggacccatttagcaccgccaagtttatccatgatgctttaaatttaaaacaatcatcatcttcatccgagtg 211  Q
    |  |||||   | ||| | ||||||||||||| |||| | ||| ||||||||||||||   | ||||||  | ||||||   ||||||| | || ||| |    
T  29131311 tgccttcatgatatgacatcaatgcaatggacacattcaacactgccaagtttatccaattttctttaacatcaaaaca---atcatctacgtctgaggg 29131215  T
Q  212 tatgggtgttacaaggaacacctcattgctcaagtaaaatgataccaaacatggt 266  Q
    ||||||||||   | |||||| |||||||||||||||||||||||||||||||||    
T  29131214 tatgggtgttgtgacgaacacttcattgctcaagtaaaatgataccaaacatggt 29131160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 34282021 - 34281770
Alignment:
Q  12 ataggacgctcaacacaaggcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagtcg 111  Q
    ||||||||||||||  ||||||| |||||||| ||||||||||||||||| ||||| || | ||| | || |||||||||||||||| |||||||| | |    
T  34282021 ataggacgctcaacgtaaggcaacggtccaaccataaagagtttgatccacgattctttgaaaccgagttgacccaaaattgatacacgaaaagtacttg 34281922  T
Q  112 tctcttcaatgtgtgagaacaatgcaatggacccatttagcaccgccaagtttatccatgatgctttaaatttaaaacaatcatcatcttcatccgagtg 211  Q
    |||||| |   | ||||| |||||| ||| ||||||||| |||| |||||||| ||||   ||||||||  | ||||||   ||||||| | || | | |    
T  34281921 tctctttacgatatgagatcaatgctatgtacccatttaacaccaccaagtttttccactttgctttaacatcaaaaca---atcatctacgtctggggg 34281825  T
Q  212 tatgggtgttacaaggaacacctcattgctcaagtaaaatgataccaaacatggt 266  Q
    ||||| ||||   | | |||| |||||||||||||||||||||||||||||||||    
T  34281824 tatggctgttgtgaaggacacttcattgctcaagtaaaatgataccaaacatggt 34281770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 169
Target Start/End: Complemental strand, 29124251 - 29124094
Alignment:
Q  12 ataggacgctcaacacaaggcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagtcg 111  Q
    |||||||| |||||||||||||||||||| | | | ||||| ||| |||| |||||||||||||| || ||||||| ||||||||  ||||||||||||     
T  29124251 ataggacgatcaacacaaggcaatggtcccatagtgaagagcttggtccatgattccttcataccgatctcacccagaattgatatctgaaaagtagtct 29124152  T
Q  112 tctcttcaatgtgtgagaacaatgcaatggacccatttagcaccgccaagtttatcca 169  Q
    ||| ||||   | ||||||||||||||||| |||||||| ||| ||||||||| ||||    
T  29124151 tcttttcatgatatgagaacaatgcaatggtcccatttaacactgccaagtttctcca 29124094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 29300181 - 29299930
Alignment:
Q  12 ataggacgctcaacacaaggcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagtcg 111  Q
    ||||||||||  || |||| ||| ||||||||| | ||||| ||| |||| |||||||| ||||  |  ||||||||||||||||  |||||||||||||    
T  29300181 ataggacgctggacgcaagccaacggtccaacattgaagagattggtccacgattcctttatactgagctcacccaaaattgatatgtgaaaagtagtcg 29300082  T
Q  112 tctcttcaatgtgtgagaacaatgcaatggacccatttagcaccgccaagtttatccatgatgctttaaatttaaaacaatcatcatcttcatccgagtg 211  Q
    ||| ||       ||||| ||| |||||||||||||||| ||| ||||||||||||||   ||||  ||  | ||||||||||||   ||| ||||||      
T  29300081 tctttttttgaaatgagatcaaggcaatggacccatttaacacagccaagtttatccactttgctccaacatcaaaacaatcatc---ttcgtccgagga 29299985  T
Q  212 tatgggtgttacaaggaacacctcattgctcaagtaaaatgataccaaacatggt 266  Q
     || ||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  29299984 aataggtgttataaggaacacctcattgctcaagtaaaatgacaccaaacatggt 29299930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 12 - 165
Target Start/End: Complemental strand, 29012935 - 29012782
Alignment:
Q  12 ataggacgctcaacacaaggcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagtcg 111  Q
    |||||||||| ||| |||| ||| ||||||||||| ||||||||| |||| |||||||||| ||| |  || |||||||||||||  |||||| ||||||    
T  29012935 ataggacgcttaacgcaagacaacggtccaacaatgaagagtttggtccatgattccttcacaccgaaatcccccaaaattgatatgtgaaaattagtcg 29012836  T
Q  112 tctcttcaatgtgtgagaacaatgcaatggacccatttagcaccgccaagttta 165  Q
    |||||| |   | ||||| ||||||||||||||||||||  |||||||||||||    
T  29012835 tctctttatgatatgagaccaatgcaatggacccatttaataccgccaagttta 29012782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 12 - 169
Target Start/End: Original strand, 34278422 - 34278579
Alignment:
Q  12 ataggacgctcaacacaaggcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagtcg 111  Q
    ||||||||||||||  ||||||| |||||||| || |||||||||||||||||||| || | ||| | || ||||||||| |||||| |||||||||||     
T  34278422 ataggacgctcaacgtaaggcaacggtccaaccatgaagagtttgatccaagattctttgaaaccgagttgacccaaaatcgatacacgaaaagtagtca 34278521  T
Q  112 tctcttcaatgtgtgagaacaatgcaatggacccatttagcaccgccaagtttatcca 169  Q
    |||||| |   | || || |||||| ||||||||||||| |||| |||||||||||||    
T  34278522 tctctttatgatatgtgatcaatgctatggacccatttaacaccaccaagtttatcca 34278579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 169
Target Start/End: Complemental strand, 29137383 - 29137228
Alignment:
Q  14 aggacgctcaacacaaggcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagtcgtc 113  Q
    |||||||||||||||||||||||||| |||  | |||||  || |||| | |||||||||||||| |||||||||||| |||||||||||||||| | ||    
T  29137383 aggacgctcaacacaaggcaatggtctaactgtgaagagcctggtccatgtttccttcataccaacttcacccaaaatagatacatgaaaagtagccatc 29137284  T
Q  114 tcttcaatgtgtgagaacaatgcaatggacccatttagcaccgccaagtttatcca 169  Q
    | ||||   | ||| | |||||||||||||  ||||| |||| |||||||||||||    
T  29137283 ttttcatgatatgatatcaatgcaatggacaaatttaacaccaccaagtttatcca 29137228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 266
Target Start/End: Complemental strand, 29145376 - 29145148
Alignment:
Q  35 tggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagtcgtctcttcaatgtgtgagaacaat 134  Q
    |||||||| ||||||||||||| |||| |||||||||||||| | | |||||||||||||||  |||||| |||| || | ||||   | ||||| ||||    
T  29145376 tggtccaagaataaagagtttggtccatgattccttcatacctaatccacccaaaattgatatgtgaaaattagtagtttgttcatgatatgagatcaat 29145277  T
Q  135 gcaatggacccatttagcaccgccaagtttatccatgatgctttaaatttaaaacaatcatcatcttcatccgagtgtatgggtgttacaaggaacacct 234  Q
    |||||| |  |||||| ||| |||| |||||||||  |||||| ||  |  |||||   |||||||   || ||| ||||||||||||| | ||||||||    
T  29145276 gcaatgaaatcatttatcactgccaggtttatccacaatgcttcaacatcgaaaca---atcatctaagtctgagggtatgggtgttactaagaacacct 29145180  T
Q  235 cattgctcaagtaaaatgataccaaacatggt 266  Q
    || | |||||||||||||| ||||||||||||    
T  29145179 cactactcaagtaaaatgacaccaaacatggt 29145148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 32740689 - 32740823
Alignment:
Q  12 ataggacgctcaacacaaggcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagtcg 111  Q
    |||||||| | ||||| || ||||||||||||||| ||||||||| |||| |||||||| || || | ||||||||||||||||||  |||||||||| |    
T  32740689 ataggacgttgaacaccagacaatggtccaacaatgaagagtttggtccacgattcctttatgccgaattcacccaaaattgatacgagaaaagtagttg 32740788  T
Q  112 tctcttcaatgtgtgagaacaatgcaatggaccca 146  Q
    | ||||||   ||||||| ||| |||||| |||||    
T  32740789 tgtcttcatgatgtgagatcaaggcaatgaaccca 32740823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 23218766 - 23218821
Alignment:
Q  211 gtatgggtgttacaaggaacacctcattgctcaagtaaaatgataccaaacatggt 266  Q
    ||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||    
T  23218766 gtatgggtgttactaagaacacctcattgctcaagtaaaatgacaccaaacatggt 23218821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 25528980 - 25529034
Alignment:
Q  212 tatgggtgttacaaggaacacctcattgctcaagtaaaatgataccaaacatggt 266  Q
    |||||||||||  | |||||||||||||||||||| |||||||||||||||||||    
T  25528980 tatgggtgttaggacgaacacctcattgctcaagttaaatgataccaaacatggt 25529034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 26090880 - 26090934
Alignment:
Q  212 tatgggtgttacaaggaacacctcattgctcaagtaaaatgataccaaacatggt 266  Q
    ||||||||||| || |||||||||||||||||||| ||||||||||| |||||||    
T  26090880 tatgggtgttataaagaacacctcattgctcaagttaaatgataccagacatggt 26090934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 266
Target Start/End: Original strand, 34258303 - 34258480
Alignment:
Q  86 caaaattgatacatgaaaagtagtcgtctcttcaatgtgtgagaacaatgcaatggacccatttagcaccgccaagtttatccatgatgctttaaattta 185  Q
    |||||||||||  |||||||| || || | |||| | | |||||  || |||||| ||||||||| ||||||||||||||||||   ||||||||  | |    
T  34258303 caaaattgatatgtgaaaagttgtagttttttcattatatgagagtaaggcaatgaacccatttaacaccgccaagtttatccactttgctttaacatca 34258402  T
Q  186 aaacaatcatcatcttcatccgagtgtatgggtgttacaaggaacacctcattgctcaagtaaaatgataccaaacatggt 266  Q
    |||||||||||| | | ||  ||| |||| ||||||   | |||||| |||||||| |||| |||||||||||||||||||    
T  34258403 aaacaatcatcaacgt-at--gagggtattggtgttttgaagaacacatcattgcttaagtcaaatgataccaaacatggt 34258480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 273
Target Start/End: Complemental strand, 29124043 - 29123966
Alignment:
Q  196 catcttcatccgagtgtatgggtgttacaaggaacacctcattgctcaagtaaaatgataccaaacatggttgaaatg 273  Q
    ||||| |||| ||| ||||||||||||  | |||||| || |||||||||||||| ||||||||||  ||||||||||    
T  29124043 catctacatctgagggtatgggtgttatgaagaacacttcgttgctcaagtaaaacgataccaaactaggttgaaatg 29123966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 264
Target Start/End: Complemental strand, 29012723 - 29012686
Alignment:
Q  227 gaacacctcattgctcaagtaaaatgataccaaacatg 264  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  29012723 gaacccctcattgctaaagtaaaatgataccaaacatg 29012686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 262
Target Start/End: Original strand, 34278641 - 34278669
Alignment:
Q  234 tcattgctcaagtaaaatgataccaaaca 262  Q
    |||||||||||||||||||||||||||||    
T  34278641 tcattgctcaagtaaaatgataccaaaca 34278669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 266
Target Start/End: Original strand, 39793 - 40044
Alignment:
Q  12 ataggacgctcaacacaaggcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagtcg 111  Q
    |||||||||||||| |||| ||| ||||||||| |||||||||||||||| |||||||| || || | |||||||||||||| ||  ||||||||||| |    
T  39793 ataggacgctcaacgcaagacaacggtccaacagtaaagagtttgatccacgattccttaatgccgagttcacccaaaattgctatgtgaaaagtagtag 39892  T
Q  112 tctcttcaatgtgtgagaa-caatgcaatggacccatttagcaccgccaagtttatccatgatgctttaaatttaaaacaatcatcatcttcatccgagt 210  Q
    ||||  | |||      |  ||| | |||||||||||||| || | |||| ||||||  ||| |||||||||||||||||||||   ||||||||||||     
T  39893 tctcc-cgatgaaacgcagtcaaggaaatggacccatttaacaacaccaaatttatctttgaagctttaaatttaaaacaatca---tcttcatccgagg 39988  T
Q  211 gtatgggtgttacaaggaacacctcattgctcaagtaaaatgataccaaacatggt 266  Q
    |||||||||||| |  |||||||||||| ||||||||||||||||| |||||||||    
T  39989 gtatgggtgttatacagaacacctcatttctcaagtaaaatgatactaaacatggt 40044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 266
Target Start/End: Original strand, 33442 - 33693
Alignment:
Q  12 ataggacgctcaacacaaggcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagtcg 111  Q
    |||||||||||||| |||| ||| ||||||||| | ||||||||| |||| |||||||| || || | |||||||||||||| ||  | ||||||||| |    
T  33442 ataggacgctcaacgcaagacaacggtccaacagtgaagagtttggtccacgattccttaatgccgagttcacccaaaattgctatgtcaaaagtagtag 33541  T
Q  112 tctcttcaatgtgt-gagaacaatgcaatggacccatttagcaccgccaagtttatccatgatgctttaaatttaaaacaatcatcatcttcatccgagt 210  Q
    ||||  | |||    | || ||| | |||||| |||||||  | | |||| |||||| |||| ||||||||||||||||| ||||   |||||||||||     
T  33542 tctcc-cgatgaaacgcgatcaaggaaatggaaccatttaataacaccaaatttatcgatgaagctttaaatttaaaacagtcat---cttcatccgagg 33637  T
Q  211 gtatgggtgttacaaggaacacctcattgctcaagtaaaatgataccaaacatggt 266  Q
    |||||||||||| |  |||||||||||| ||||||||||||||||| |||||||||    
T  33638 gtatgggtgttatacagaacacctcatttctcaagtaaaatgatactaaacatggt 33693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 169
Target Start/End: Complemental strand, 37898012 - 37897891
Alignment:
Q  48 aagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagtcgtctcttcaatgtgtgagaacaatgcaatggacccat 147  Q
    ||||||||| |||| |||||||||||||||| ||| ||||||| |||||| |||||||||||||||||||||   | ||||||||||||||||||| |||    
T  37898012 aagagtttggtccacgattccttcataccaagttcgcccaaaactgatacgtgaaaagtagtcgtctcttcatgatatgagaacaatgcaatggactcat 37897913  T
Q  148 ttagcaccgccaagtttatcca 169  Q
     || ||||||||||||||||||    
T  37897912 ataacaccgccaagtttatcca 37897891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 169
Target Start/End: Original strand, 9581957 - 9582114
Alignment:
Q  12 ataggacgctcaacacaaggcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagtcg 111  Q
    |||||||||||||  |||| ||| |||||||| || ||||||||| |||| || ||||| |||||   |||||||||||||||||  |||||| | ||||    
T  9581957 ataggacgctcaatgcaagacaacggtccaaccatgaagagtttggtccatgactcctttataccgtattcacccaaaattgatatgtgaaaatttgtcg 9582056  T
Q  112 tctcttcaatgtgtgagaacaatgcaatggacccatttagcaccgccaagtttatcca 169  Q
    ||||||||   | ||||| |||||||||||||||||||| ||||||||||||||||||    
T  9582057 tctcttcatgatatgagatcaatgcaatggacccatttaacaccgccaagtttatcca 9582114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 169
Target Start/End: Original strand, 9587652 - 9587809
Alignment:
Q  12 ataggacgctcaacacaaggcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagtcg 111  Q
    |||||||||||||  |||| ||| |||||||| || ||||||||| |||| || ||||| |||||   |||||||||||||||||  |||||| | ||||    
T  9587652 ataggacgctcaatgcaagacaacggtccaaccatgaagagtttggtccatgactcctttataccgtattcacccaaaattgatatgtgaaaatttgtcg 9587751  T
Q  112 tctcttcaatgtgtgagaacaatgcaatggacccatttagcaccgccaagtttatcca 169  Q
    ||||||||   | ||||| |||||||||||||||||||| ||||||||||||||||||    
T  9587752 tctcttcatgatatgagatcaatgcaatggacccatttaacaccgccaagtttatcca 9587809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 266
Target Start/End: Original strand, 54295055 - 54295306
Alignment:
Q  12 ataggacgctcaacacaaggcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagtcg 111  Q
    |||||| |||||||| ||| ||| ||||||||||| || |||||| |||| |||||  ||| ||| | |||||||||||||||||  |||||| |||| |    
T  54295055 ataggatgctcaacataagacaacggtccaacaatgaaaagtttggtccacgattctatcacaccgaattcacccaaaattgatatgtgaaaattagtgg 54295154  T
Q  112 tctcttcaatgtgtgagaacaatgcaatggacccatttagcaccgccaagtttatccatgatgctttaaatttaaaacaatcatcatcttcatccgagtg 211  Q
     |||||||   | ||||| |||||||||| |||||||||| ||||||||| |||||||  |||||| ||  | ||||||   |||||||   |  |||      
T  54295155 actcttcatgatatgagatcaatgcaatgcacccatttagtaccgccaaggttatccacaatgcttgaacatcaaaaca---atcatctaagtttgagga 54295251  T
Q  212 tatgggtgttacaaggaacacctcattgctcaagtaaaatgataccaaacatggt 266  Q
    |||||||||||  |  |||| ||||||||||||||||||||||||||||||||||    
T  54295252 tatgggtgttatgaaaaacatctcattgctcaagtaaaatgataccaaacatggt 54295306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 259
Target Start/End: Original strand, 9602559 - 9602797
Alignment:
Q  12 ataggacgctcaacacaaggcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagtcg 111  Q
    |||||||||||||  |||| ||| | ||||||| ||||||||||| |||| || ||||| |||||   |||||||||||||||||  |||||| || |||    
T  9602559 ataggacgctcaatgcaagacaacgatccaacattaaagagtttggtccacgactcctttataccgtattcacccaaaattgatatttgaaaattattcg 9602658  T
Q  112 tctcttcaatgtgtgagaacaatgcaatggacccatttagcaccgccaagtttatccatgatgctttaaatttaaaacaatcatcatcttcatccgagtg 211  Q
    |||||| |   | ||||| ||||| || ||||||||||| |||| |||||||||||||  ||||      ||| |||||   |||||||   | |||| |    
T  9602659 tctctttatgatatgagatcaatgaaacggacccatttaacaccaccaagtttatccacaatgc------tttgaaaca---atcatctaagtacgaggg 9602749  T
Q  212 tatgggtgttacaaggaacacctcattgctcaagtaaaatgataccaa 259  Q
    |||||||||||  | ||| |||||||||||||||||||||||||||||    
T  9602750 tatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaa 9602797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 169
Target Start/End: Complemental strand, 9569295 - 9569138
Alignment:
Q  12 ataggacgctcaacacaaggcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagtcg 111  Q
    |||||||||||||  |||| ||| ||||||||||  ||||||||| |||| |||||||| || |||  |||||||||||| ||||  |||||| ||||||    
T  9569295 ataggacgctcaatgcaagacaacggtccaacaaggaagagtttggtccacgattccttaatgccatattcacccaaaatcgatatgtgaaaattagtcg 9569196  T
Q  112 tctcttcaatgtgtgagaacaatgcaatggacccatttagcaccgccaagtttatcca 169  Q
    ||||||||   | ||||| ||| ||||||| ||| |||| |||| |||||||||||||    
T  9569195 tctcttcatgatatgagatcaacgcaatggccccgtttaacaccaccaagtttatcca 9569138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 266
Target Start/End: Original strand, 9593753 - 9594001
Alignment:
Q  15 ggacgctcaacacaaggcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagtcgtct 114  Q
    ||||||||||   ||| ||| ||||| ||||| ||||  ||| |||| |||||||| |||||   |||||||||||||||||  |||||| |||| ||||    
T  9593753 ggacgctcaatgaaagacaacggtccgacaatgaagaaattggtccacgattcctttataccgtattcacccaaaattgatatctgaaaattagttgtct 9593852  T
Q  115 cttcaatgtgtgagaacaatgcaatggacccatttagcaccgccaagtttatccatgatgctttaaatttaaaacaatcatcatcttcatccgagtgtat 214  Q
    ||| |   | ||||| |||||||| ||||||||||| |||| |||||||||||||  |||| | ||  |  |||||||||||    | ||  ||| | ||    
T  9593853 ctttatgatatgagatcaatgcaaaggacccatttaacaccaccaagtttatccacaatgcgtgaagatcgaaacaatcatccaagt-at--gagggaat 9593949  T
Q  215 gggtgttacaaggaacacctcattgctcaagtaaaatgataccaaacatggt 266  Q
    ||||||||  | |||||||||||||||||||||||| |||||||||||||||    
T  9593950 gggtgttatgaagaacacctcattgctcaagtaaaaggataccaaacatggt 9594001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 37895888 - 37895833
Alignment:
Q  211 gtatgggtgttacaaggaacacctcattgctcaagtaaaatgataccaaacatggt 266  Q
    ||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||    
T  37895888 gtatgggtgttacgaagaacacctcattgctcaggtaaaatgataccaaacatggt 37895833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 20426696 - 20426618
Alignment:
Q  31 gcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagt 109  Q
    ||||||||||||||| |||||||||| |||| ||||||||||  || | |||||  ||||||||||  |||||||||||    
T  20426696 gcaatggtccaacaacaaagagtttggtccacgattccttcacgccgagttcacttaaaattgatatgtgaaaagtagt 20426618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 266
Target Start/End: Complemental strand, 9569077 - 9569044
Alignment:
Q  233 ctcattgctcaagtaaaatgataccaaacatggt 266  Q
    ||||||||||||||||||||||||||||||||||    
T  9569077 ctcattgctcaagtaaaatgataccaaacatggt 9569044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 9574230 - 9574177
Alignment:
Q  211 gtatgggtgttacaaggaacacctcattgctcaagtaaaatgataccaaacatg 264  Q
    ||||||||||||  | |||  |||||||||||||||||||||||||||||||||    
T  9574230 gtatgggtgttatgaagaattcctcattgctcaagtaaaatgataccaaacatg 9574177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 42449893 - 42449820
Alignment:
Q  23 aacacaaggcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgata 96  Q
    |||| |||| || ||||||||||||||||| ||||||||||||||  ||  ||||| || ||||||||||||||    
T  42449893 aacaaaaggtaagggtccaacaataaagagattgatccaagattctctcgcaccaagtttacccaaaattgata 42449820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 266
Target Start/End: Original strand, 9582174 - 9582208
Alignment:
Q  232 cctcattgctcaagtaaaatgataccaaacatggt 266  Q
    ||||||||||||||||||||||||||| |||||||    
T  9582174 cctcattgctcaagtaaaatgataccacacatggt 9582208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 266
Target Start/End: Original strand, 9587869 - 9587903
Alignment:
Q  232 cctcattgctcaagtaaaatgataccaaacatggt 266  Q
    ||||||||||||||||||||||||||| |||||||    
T  9587869 cctcattgctcaagtaaaatgataccacacatggt 9587903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 48741982 - 48742042
Alignment:
Q  36 ggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgata 96  Q
    ||||||| ||| ||||||||  ||||||||||||||| ||| | |||||| ||||||||||    
T  48741982 ggtccaaaaatgaagagtttagtccaagattccttcacaccgagttcacctaaaattgata 48742042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 264
Target Start/End: Original strand, 16215 - 16449
Alignment:
Q  27 caaggcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagtcgtctcttcaatgtgtg 126  Q
    |||| ||||||||||| | | ||||| |||||||| ||||||||| ||||||||||||||||||||||||  |||||||||||| |   ||||   |  |    
T  16215 caagacaatggtccaatagtgaagagattgatccatgattccttcttaccaatttcacccaaaattgatatgtgaaaagtagtccttggttcatgataag 16314  T
Q  127 agaacaatgcaatggacccatttagcaccgccaagtttatccatgatgctttaaatttaaaacaatcatcatcttcatccgagtgtatgggtgttacaag 226  Q
    ||| |||||||||| || |||||| |   |||||||||||||||||||||| ||  | ||||||   |||||||   |  ||| ||||||||||||  |     
T  16315 agatcaatgcaatgcactcatttaaccgtgccaagtttatccatgatgcttcaacatcaaaaca---atcatctaagtttgagggtatgggtgttattaa 16411  T
Q  227 gaacacctcattgctcaagtaaaatgataccaaacatg 264  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  16412 gaacacctcattgctcaagtaaaatgacaccaaacatg 16449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0613 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 292 - 48
Alignment:
Q  20 ctcaacacaaggcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagtcgtctcttca 119  Q
    |||||| |||| ||||||||||| | | ||| | ||| |||| ||||| ||| | ||||||||||||||||||||||  |||||||||||| |   | ||    
T  292 ctcaacgcaagacaatggtccaatagtgaagtgattggtccatgattcattctttccaatttcacccaaaattgatatgtgaaaagtagtccttggtaca 193  T
Q  120 atgtgtgagaacaatgcaatggacccatttagcaccgccaagtttatccatgatgctttaaatttaaaacaatcatcatcttcatccgagtgtatgggtg 219  Q
       |  |||| |||||||||| || |||||| |   |||||||||||||| ||||||| ||  | ||||||||||||   |   |  ||| |||||||||    
T  192 tgataagagatcaatgcaatgcactcatttaaccatgccaagtttatccaggatgcttcaacatcaaaacaatcatc---taagtttgagggtatgggtg 96  T
Q  220 ttacaaggaacacctcattgctcaagtaaaatgataccaaacatggtt 267  Q
    |||  | ||||||||||||||||||||||||||| |||||||||||||    
T  95 ttattaagaacacctcattgctcaagtaaaatgacaccaaacatggtt 48  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 368882 - 368801
Alignment:
Q  28 aaggcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagt 109  Q
    |||| |||||||||||||| |||||||||||||| |||||||||| |||||||||||| | ||||||||  |||||||||||    
T  368882 aaggtaatggtccaacaatgaagagtttgatccatgattccttcacaccaatttcaccaagaattgatatgtgaaaagtagt 368801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 361959 - 361882
Alignment:
Q  33 aatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagtc 110  Q
    |||||||||||||| ||||| || ||||| |||||||||| ||| |||||||| | ||||||||  ||||||||||||    
T  361959 aatggtccaacaatgaagagctttatccatgattccttcacaccgatttcaccaagaattgatatgtgaaaagtagtc 361882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 51874684 - 51874780
Alignment:
Q  14 aggacgctcaacacaaggcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagtc 110  Q
    |||||| ||||| ||||  ||||| |||||||  || ||||||||||| |||||||||| ||  | ||||||||||||||| | || ||||||||||    
T  51874684 aggacgttcaacgcaagataatggcccaacaaggaaaagtttgatccatgattccttcacacttagttcacccaaaattgaaatattaaaagtagtc 51874780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 42446440 - 42446356
Alignment:
Q  12 ataggacgctcaacacaaggcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgata 96  Q
    |||||||||||||||||| |||| ||||||||||| | ||||||| |||| |||||||| ||| ||| |||||||||||||||||    
T  42446440 ataggacgctcaacacaatgcaacggtccaacaatgacgagtttggtccatgattccttgatagcaagttcacccaaaattgata 42446356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 263
Target Start/End: Complemental strand, 7793791 - 7793675
Alignment:
Q  144 ccatttagcaccgccaagtttatccatgatgctttaaatttaaaacaatcatcatcttcatccgagtgtatgggtgttacaaggaacacctcattgctca 243  Q
    ||||||| |||| |||| |||||||| || |||||||||||||||||||   |||||||||| ||  |||| |||||||  | |||| ||||||||||||    
T  7793791 ccatttaacaccaccaaatttatccacgaagctttaaatttaaaacaat---catcttcatctgaaggtataggtgttatgaagaacgcctcattgctca 7793695  T
Q  244 agtaaaatgataccaaacat 263  Q
    ||||||| |||| |||||||    
T  7793694 agtaaaaagatagcaaacat 7793675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 5438313 - 5438370
Alignment:
Q  50 gagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagta 107  Q
    |||||| ||||| |||||||||||||||| ||||||||||| ||||| ||||||||||    
T  5438313 gagttttatccatgattccttcataccaagttcacccaaaactgatatatgaaaagta 5438370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 5447289 - 5447346
Alignment:
Q  50 gagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagta 107  Q
    |||||| ||||| |||||||||||||||| ||||||||||| ||||| ||||||||||    
T  5447289 gagttttatccatgattccttcataccaagttcacccaaaactgatatatgaaaagta 5447346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 45866925 - 45866871
Alignment:
Q  42 acaataaagagtttgatccaagattccttcataccaatttcacccaaaattgata 96  Q
    |||||||| ||||||||||| || |||||||  ||||||||||| ||||||||||    
T  45866925 acaataaaaagtttgatccatgactccttcactccaatttcacctaaaattgata 45866871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 266
Target Start/End: Complemental strand, 42446222 - 42446190
Alignment:
Q  234 tcattgctcaagtaaaatgataccaaacatggt 266  Q
    ||||||||||||| |||||||||||||||||||    
T  42446222 tcattgctcaagtcaaatgataccaaacatggt 42446190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 7488727 - 7488824
Alignment:
Q  12 ataggacgctcaacacaaggcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagt 109  Q
    ||||||||  ||||||||| ||||||||||||| | || |||||  |||| ||||| |||| |||||||||||||||||||||||  |||||||||||    
T  7488727 ataggacgtgcaacacaagacaatggtccaacattgaaaagttttttccatgattctttcacaccaatttcacccaaaattgatatgtgaaaagtagt 7488824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 7524043 - 7524130
Alignment:
Q  29 aggcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagtcgtctct 116  Q
    ||||||||| |||||||| ||||| ||  |||||||||| || | |||||||||||| ||||| ||||| |||| |||| ||||||||    
T  7524043 aggcaatggcccaacaatgaagagcttagtccaagattcttttacaccaatttcacctaaaatcgatacgtgaagagtattcgtctct 7524130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 7498877 - 7498965
Alignment:
Q  22 caacacaaggcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagtc 110  Q
    ||||||||| |||||| |||||| | ||||||||  |||| ||||| ||||   |||||||| ||||||||||||  ||||||||||||    
T  7498877 caacacaagacaatggcccaacattgaagagtttagtccatgattctttcacgtcaatttcatccaaaattgatatgtgaaaagtagtc 7498965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 44937793 - 44937867
Alignment:
Q  35 tggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagt 109  Q
    ||||||||||| |||||||||  |||| ||||| ||||  || | |||||||||||||||||  |||||||||||    
T  44937793 tggtccaacaacaaagagtttagtccatgattctttcacgccgagttcacccaaaattgatatgtgaaaagtagt 44937867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 44912517 - 44912578
Alignment:
Q  35 tggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgata 96  Q
    ||||||||||| |||||||||  | || |||||||||| ||||| |||||||||||| ||||    
T  44912517 tggtccaacaacaaagagtttagttcacgattccttcacaccaagttcacccaaaatcgata 44912578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 31789581 - 31789523
Alignment:
Q  48 aagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagt 106  Q
    |||||||||||||| |||||||||| ||||| ||||||||||||||||| ||| |||||    
T  31789581 aagagtttgatccatgattccttcacaccaacttcacccaaaattgatatatggaaagt 31789523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 42629603 - 42629697
Alignment:
Q  12 ataggacgctcaacacaaggcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagt 106  Q
    |||||| |||||||||| | ||| || || |||||||| ||||||||||| || |||||||  || | ||||||||||||||||| |||||||||    
T  42629603 ataggatgctcaacacaggtcaacggacccacaataaaaagtttgatccatgactccttcactccgacttcacccaaaattgatatatgaaaagt 42629697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 40545178 - 40545118
Alignment:
Q  46 taaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagt 106  Q
    |||| ||||||||||| |||||||||| ||||| |||||||||||||||||  ||||||||    
T  40545178 taaaaagtttgatccatgattccttcacaccaacttcacccaaaattgatatgtgaaaagt 40545118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 40549344 - 40549288
Alignment:
Q  40 caacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgata 96  Q
    |||||| ||||||||||||||| |||||||||| ||| | |||||||||||||||||    
T  40549344 caacaacaaagagtttgatccatgattccttcacaccgacttcacccaaaattgata 40549288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 42564959 - 42565041
Alignment:
Q  27 caaggcaatggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagt 109  Q
    ||||||| |||||||||||| || ||||||||||| |||||||| | ||| | ||||||||||| |||||  | |||||||||    
T  42564959 caaggcagtggtccaacaatgaaaagtttgatccatgattccttgacacctagttcacccaaaactgatatgttaaaagtagt 42565041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 32032930 - 32032882
Alignment:
Q  48 aagagtttgatccaagattccttcataccaatttcacccaaaattgata 96  Q
    |||||||||||||| |||||||||| ||||| ||||||| |||||||||    
T  32032930 aagagtttgatccatgattccttcacaccaacttcaccccaaattgata 32032882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 32643050 - 32642992
Alignment:
Q  14 aggacgctcaacacaaggcaatggtccaacaataaagagtttgatccaagattccttca 72  Q
    ||||||||| ||||| | ||  ||||||||||| |||||||||||||| ||||||||||    
T  32643050 aggacgctcgacacatgacagaggtccaacaatgaagagtttgatccatgattccttca 32642992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 43322868 - 43322798
Alignment:
Q  39 ccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagt 109  Q
    |||||||||||||||||||||||  ||| ||| | ||| | |||||||||||| || | ||||||||||||    
T  43322868 ccaacaataaagagtttgatccataatttctttacaccgagttcacccaaaatcgaaatatgaaaagtagt 43322798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 42637359 - 42637420
Alignment:
Q  48 aagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagt 109  Q
    ||||||||| |||| ||||||||||  || | |||||||||||||||||  |||||||||||    
T  42637359 aagagtttggtccatgattccttcaccccgacttcacccaaaattgatatgtgaaaagtagt 42637420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 5162511 - 5162463
Alignment:
Q  48 aagagtttgatccaagattccttcataccaatttcacccaaaattgata 96  Q
    |||||||||||||| |||||||||| ||||| |||||||||||||||||    
T  5162511 aagagtttgatccatgattccttcacaccaacttcacccaaaattgata 5162463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 10542 - 10482
Alignment:
Q  48 aagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtag 108  Q
    ||||||||  ||||||| ||||||| ||||| |||||||||||||||||  ||||||||||    
T  10542 aagagtttagtccaagactccttcacaccaacttcacccaaaattgatatgtgaaaagtag 10482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 33551 - 33622
Alignment:
Q  39 ccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgatacatgaaaagtagtc 110  Q
    |||| ||||||||||||  ||||||| ||||||| ||||| |||||||||||| || |  ||||||||||||    
T  33551 ccaataataaagagtttagtccaagactccttcacaccaagttcacccaaaatagaaatgtgaaaagtagtc 33622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 12652339 - 12652279
Alignment:
Q  36 ggtccaacaataaagagtttgatccaagattccttcataccaatttcacccaaaattgata 96  Q
    |||||||||| |||||||||  |||| |||||||  | |||||||||||||||||| ||||    
T  12652339 ggtccaacaacaaagagtttagtccacgattcctcaacaccaatttcacccaaaatcgata 12652279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 24466389 - 24466341
Alignment:
Q  48 aagagtttgatccaagattccttcataccaatttcacccaaaattgata 96  Q
    |||||| | |||||||||||||| | ||||| |||||||||||||||||    
T  24466389 aagagtctaatccaagattccttaacaccaaattcacccaaaattgata 24466341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University