View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19409_low_44 (Length: 281)

Name: NF19409_low_44
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19409_low_44
NF19409_low_44
[»] chr2 (3 HSPs)
chr2 (18-263)||(8020456-8020701)
chr2 (18-84)||(22965011-22965077)
chr2 (18-84)||(22399511-22399577)
[»] chr3 (12 HSPs)
chr3 (18-248)||(28150789-28151015)
chr3 (57-239)||(27979356-27979538)
chr3 (22-263)||(28003024-28003260)
chr3 (58-263)||(27919212-27919414)
chr3 (26-263)||(11419841-11420075)
chr3 (18-258)||(27459909-27460146)
chr3 (89-209)||(17745559-17745680)
chr3 (89-209)||(19046879-19047000)
chr3 (88-263)||(28036274-28036452)
chr3 (113-204)||(28184714-28184805)
chr3 (18-89)||(26236439-26236510)
chr3 (114-204)||(28160162-28160252)
[»] chr4 (1 HSPs)
chr4 (126-239)||(18010659-18010772)


Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 8020701 - 8020456
Alignment:
Q  18 atttggagaggaatatccaagtgattttcacatggccttcaaattacttttgaatttgttggtaatattgttgctactgatggcatctcttgttgaggaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020701 atttggagaggaatatccaagtgattttcacatggccttcaaattacttttgaatttgttggtaatattgttgctactgatggcatctcttgttgaggaa 8020602  T
Q  118 caatttcaacaaattcatgctctgtctctagtgtttgttccatttctttctgcatcaaaaataaaatgtttgtttcaaatacattgtattggtgattgta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020601 caatttcaacaaattcatgctctgtctctagtgtttgttccatttctttctgcatcaaaaataaaatgtttgtttcaaatacattgtattggtgattgta 8020502  T
Q  218 ttcatatgtggttaacttgaataaatagaatagtattgaccggtga 263  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  8020501 ttcatatgtggttaacttgaataaatagaatagtattgacccgtga 8020456  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 22965077 - 22965011
Alignment:
Q  18 atttggagaggaatatccaagtgattttcacatggccttcaaattacttttgaatttgttggtaata 84  Q
    ||||||||||||||||| |||||| ||| ||| |||||||| ||||||| |||||||||||||||||    
T  22965077 atttggagaggaatatcgaagtgaatttgacacggccttcatattacttctgaatttgttggtaata 22965011  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 22399577 - 22399511
Alignment:
Q  18 atttggagaggaatatccaagtgattttcacatggccttcaaattacttttgaatttgttggtaata 84  Q
    ||||||||||||||||  |||||| ||| ||| |||||||| ||||||| |||||||||||||||||    
T  22399577 atttggagaggaatatagaagtgaatttgacacggccttcatattacttctgaatttgttggtaata 22399511  T

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Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 28151015 - 28150789
Alignment:
Q  18 atttggagaggaatatccaagtgattttcacatggccttcaaattacttttgaatttgttggtaatattgttgctactgatggcatctcttgttgaggaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   |||||||||||||||||||||||||||    
T  28151015 atttggagaggaatatccaagtgattttcacatggccttcaaattacttttgaatttgttggtattattg---ctactgatggcatctcttgttgaggaa 28150919  T
Q  118 caatttcaacaaattcatgctctgtctctagtgtttgttccatttctttctgcatcaaaaataaaatgtttgtttcaaatacattgtattggtgattgta 217  Q
    || |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||| |||| ||||||||    
T  28150918 cattttcaacaaattcatgctttgtctctagtgtttgttccatttcttcctgcatcaaaaat-aaatgtttgattcaaatacattgcattgatgattgta 28150820  T
Q  218 ttcatatgtggttaacttgaataaatagaat 248  Q
    |||||||||||||||||||||||||||||||    
T  28150819 ttcatatgtggttaacttgaataaatagaat 28150789  T

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Target: chr3; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 57 - 239
Target Start/End: Complemental strand, 27979538 - 27979356
Alignment:
Q  57 caaattacttttgaatttgttggtaatattgttgctactgatggcatctcttgttgaggaacaatttcaacaaattcatgctctgtctctagtgtttgtt 156  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27979538 caaattactttcgaatttgttggtaatattgttgctactgatggcatgtcttgttgaggaacattttcaacaaattcatgctctgtctctagtgtttgtt 27979439  T
Q  157 ccatttctttctgcatcaaaaataaaatgtttgtttcaaatacattgtattggtgattgtattcatatgtggttaacttgaat 239  Q
    |||||||||||||||| ||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||    
T  27979438 ccatttctttctgcataaaaaatagaatgtttgtttcaattacattgcattggtgattgtattcatatgtggttatcttgaat 27979356  T

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Target: chr3; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 22 - 263
Target Start/End: Complemental strand, 28003260 - 28003024
Alignment:
Q  22 ggagaggaatatccaagtgattttcacatggccttcaaattacttttgaatttgttggtaatattgttgctactgatggcatctcttgttgaggaacaat 121  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||   ||||||||||||||||||| ||||| ||| |    
T  28003260 ggagaggattatccaagtgattttcacatggccttcaaattacttttgaatttgttggttttattg---ctactgatggcatctcttgatgagggacatt 28003164  T
Q  122 ttcaacaaattcatgctctgtctctagtgtttgttccatttctttctgcatcaaaaataaaatgtttgtttcaaatacattgtattggtgattgtattca 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||| ||||||| ||||| ||||| ||| || |||     
T  28003163 ttcaacaaattcatgctctgtctctagtgtttgttccatttctttctacacaaaaaataaaatgtttgattcaaatgcattggattggcgatagttttc- 28003065  T
Q  222 tatgtggttaacttgaataaatagaatagtattgaccggtga 263  Q
     |||||||||  ||||||||||||||||||||||||| ||||    
T  28003064 -atgtggttagattgaataaatagaatagtattgacctgtga 28003024  T

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Target: chr3; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 58 - 263
Target Start/End: Complemental strand, 27919414 - 27919212
Alignment:
Q  58 aaattacttttgaatttgttggtaatattgttgctactgatggcatctcttgttgaggaacaatttcaacaaattcatgctctgtctctagtgtttgttc 157  Q
    ||||||||| |||||||||||||| |||||   ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27919414 aaattacttctgaatttgttggtattattg---ctactgatggcatcttttgttgaggaacattttcaacaaattcatgctctgtctctagtgtttgttc 27919318  T
Q  158 catttctttctgcatcaaaaataaaatgtttgtttcaaatacattgtattggtgattgtattcatatgtggttaacttgaataaatagaatagtattgac 257  Q
     |||||||||||||  || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||  || |||||||||||||| ||||||    
T  27919317 tatttctttctgcacaaagaataaaatgtttgattcaaatacattgtattggtgattgtattcatatgtggttaggttaaataaatagaataggattgac 27919218  T
Q  258 cggtga 263  Q
    | ||||    
T  27919217 ctgtga 27919212  T

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Target: chr3; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 26 - 263
Target Start/End: Complemental strand, 11420075 - 11419841
Alignment:
Q  26 aggaatatccaagtgattttcacatggccttcaaattacttttgaatttgttggtaatattgttgctactgatggcatctcttgttgaggaacaatttca 125  Q
    |||||||| |||| |||||| || |||| |  ||||||||| |||||||||||||| |||||   ||| |||||| ||||| ||  |||||||| |||||    
T  11420075 aggaatatgcaagagattttgacgtggcttgaaaattacttctgaatttgttggtattattg---ctattgatggaatctcatgacgaggaacattttca 11419979  T
Q  126 acaaattcatgctctgtctctagtgtttgttccatttctttctgcatcaaaaataaaatgtttgtttcaaatacattgtattggtgattgtattcatatg 225  Q
    |||||| ||||||||||| ||||||||||| | |||||||||||||  ||||||||  | |||||||||||||||||| ||||||||||||||||||| |    
T  11419978 acaaatccatgctctgtcactagtgtttgtccaatttctttctgcacaaaaaataatttttttgtttcaaatacattgcattggtgattgtattcatagg 11419879  T
Q  226 tggttaacttgaataaatagaatagtattgaccggtga 263  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  11419878 tggttagcttgaataaatagaatagtattgacctgtga 11419841  T

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Target: chr3; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 27459909 - 27460146
Alignment:
Q  18 atttggagaggaatatccaagtgattttcacatggccttcaaattacttttgaatttgttggtaatattgttgctactgatggcatctcttgttgaggaa 117  Q
    ||||||||| |||||| |||| || ||  ||||||||| || ||||||| ||| | ||||||||   |||||||||||||||||||||| | ||||||||    
T  27459909 atttggagatgaatatgcaagggacttcgacatggcctgcacattacttctgagtctgttggta---ttgttgctactgatggcatctccttttgaggaa 27460005  T
Q  118 caatttcaacaaattcatgctctgtctctagtgtttgttccatttctttctgcatcaaaaataaaatgtttgtttcaaatacattgtattggtgattgta 217  Q
    || ||||| ||||||||||| ||||||| |||| ||||||||||||||||||||  |||||||||||||||| | |||||| ||||  ||| ||||||||    
T  27460006 cattttcatcaaattcatgccctgtctcaagtggttgttccatttctttctgcacaaaaaataaaatgtttgatccaaatagattgggttgatgattgta 27460105  T
Q  218 ttcatatgtggttaacttgaataaatagaatagtattgacc 258  Q
    ||| ||| | |||| ||| |||||||||||| |||||||||    
T  27460106 ttcgtatattgttagcttaaataaatagaatggtattgacc 27460146  T

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Target: chr3; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 17745559 - 17745680
Alignment:
Q  89 tgctactgatggcatctcttgttgaggaacaatttcaacaaattcatgctctgtctctagtgtttgttccatttctttctgca-tcaaaaataaaatgtt 187  Q
    ||||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||   ||||||||||||||    
T  17745559 tgctactgatggcatttctcgtcgaggaacattttcaacaaattcatgctctgtctctattgtttgttccatttctttctgcacaaaaaaataaaatgtt 17745658  T
Q  188 tgtttcaaatacattgtattgg 209  Q
    || ||||||||||||| |||||    
T  17745659 tgattcaaatacattgcattgg 17745680  T

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Target: chr3; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 19046879 - 19047000
Alignment:
Q  89 tgctactgatggcatctcttgttgaggaacaatttcaacaaattcatgctctgtctctagtgtttgttccatttctttctgca-tcaaaaataaaatgtt 187  Q
    ||||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||   ||||||||||||||    
T  19046879 tgctactgatggcatttctcgtcgaggaacattttcaacaaattcatgctctgtctctattgtttgttccatttctttctgcacaaaaaaataaaatgtt 19046978  T
Q  188 tgtttcaaatacattgtattgg 209  Q
    || ||||||||||||| |||||    
T  19046979 tgattcaaatacattgcattgg 19047000  T

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Target: chr3; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 88 - 263
Target Start/End: Complemental strand, 28036452 - 28036274
Alignment:
Q  88 ttgctactgatggcatctcttgttgaggaacaatttcaacaaattcatgctctgtctctagtgtttgtt-----ccatttctttctgcatcaaaaataaa 182  Q
    |||||||||||||||||||||   |||| | | ||||||||||||||||||||||||||||||||| ||     ||||||| |||| || ||||||||||    
T  28036452 ttgctactgatggcatctcttcacgagggaaattttcaacaaattcatgctctgtctctagtgtttcttccatgccatttcattctacaccaaaaataaa 28036353  T
Q  183 atgtttgtttcaaatacattgtattggtgattgtattcatatgtggttaacttgaataaatagaatagtattgaccggtga 263  Q
    |||||||  |||||| ||||| ||||| ||  || |||  |||||||||  || |||||||||||||||||||||| ||||    
T  28036352 atgtttgactcaaatgcattgcattggcgaaagttttc--atgtggttaggttaaataaatagaatagtattgacctgtga 28036274  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 204
Target Start/End: Complemental strand, 28184805 - 28184714
Alignment:
Q  113 aggaacaatttcaacaaattcatgctctgtctctagtgtttgttccatttctttctgcatcaaaaataaaatgtttgtttcaaatacattgt 204  Q
    ||||||| |||| |||| |||||||||||||||| |||||||||   ||| ||||||||  |||||||  |||||||  |||||||||||||    
T  28184805 aggaacattttccacaagttcatgctctgtctctggtgtttgttttgtttttttctgcacaaaaaatagcatgtttgaatcaaatacattgt 28184714  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 26236439 - 26236510
Alignment:
Q  18 atttggagaggaatatccaagtgattttcacatggccttcaaattacttttgaatttgttggtaatattgtt 89  Q
    |||||||||||||| |||| | || ||| |||||| || |||||||||| | ||||||||||||||| ||||    
T  26236439 atttggagaggaatttccatgggaattttacatggtctacaaattacttcttaatttgttggtaataatgtt 26236510  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 204
Target Start/End: Complemental strand, 28160252 - 28160162
Alignment:
Q  114 ggaacaatttcaacaaattcatgctctgtctctagtgtttgttccatttctttctgcatcaaaaataaaatgtttgtttcaaatacattgt 204  Q
    |||||| |||| |||| |||||||||||||||| ||||  ||| ||||| ||||||||  |||||||  ||| |||  |||||||||||||    
T  28160252 ggaacattttccacaagttcatgctctgtctctggtgtccgtttcatttttttctgcacaaaaaatagcatggttgaatcaaatacattgt 28160162  T

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Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 126 - 239
Target Start/End: Complemental strand, 18010772 - 18010659
Alignment:
Q  126 acaaattcatgctctgtctctagtgtttgttccatttctttctgcatcaaaaataaaatgtttgtttcaaatacattgtattggtgattgtattcatatg 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||| |||||||||||||||||||||    
T  18010772 acaaattcatgctctgtctctagtgtttgttccatttctttctgcataaaaaatagaatgtttgtttcaattacattgcattggtgattgtattcatatg 18010673  T
Q  226 tggttaacttgaat 239  Q
    |||||| |||||||    
T  18010672 tggttatcttgaat 18010659  T

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