View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19409_low_46 (Length: 275)
Name: NF19409_low_46
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 32134823 - 32134581
Alignment:
| Q |
16 |
ctggtgtgcgaaggacggcctcttttaaattttttaaaacttgggtttcccatgatgaatgccgccccctggttatctcctcttggcaaaaacatgttgt |
115 |
Q |
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| T |
32134823 |
ctggtgtgcgaaggacgacctcatttaaattttttaaaacttgggttccccatgatgaatgccgccccctgattatctcctcttggcaaaaacatgttgt |
32134724 |
T |
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| Q |
116 |
tgggtcaggaatgcacaggttacagtcaaagctactcaatgttaaaaatgccttccggatttggaataaagcagtttttggtgatgtgcaaaatcaagtc |
215 |
Q |
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| T |
32134723 |
tgggtcaggaatgcacaggttacagtcaaagctactcaatgttaaaaaggccttccggatttggaataaagcagtttttggtgatgtgcaaaatcaagtc |
32134624 |
T |
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| Q |
216 |
aagttggcagctgacgaggttacccgaattcagaacttgattg |
258 |
Q |
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| T |
32134623 |
aagttggcagctgacgaggttacccgcattcagaacttgattg |
32134581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 35 - 258
Target Start/End: Complemental strand, 22024852 - 22024629
Alignment:
| Q |
35 |
ctcttttaaattttttaaaacttgggtttcccatgatgaatgccgccccctggttatctcctcttggcaaaaacatgttgttgggtcaggaatgcacagg |
134 |
Q |
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| T |
22024852 |
ctcttttaaattcttcaaaacttggacagcccatgatgaatgtcgaccattggttctgtcttcttggcaaaaacaagtaataggatcaggtatgcacaag |
22024753 |
T |
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| Q |
135 |
ttacagtcaaagctactcaatgttaaaaatgccttccggatttggaataaagcagtttttggtgatgtgcaaaatcaagtcaagttggcagctgacgagg |
234 |
Q |
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| T |
22024752 |
cttcactcaaaattgctcaatgttaagaaagccttccgggtttggaatacaacggtttttggtaatgttcagagacaggtcaagttggcggctgatgagg |
22024653 |
T |
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| Q |
235 |
ttacccgaattcagaacttgattg |
258 |
Q |
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|||| |||||||||||||||||| |
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| T |
22024652 |
ttactagaattcagaacttgattg |
22024629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 258
Target Start/End: Original strand, 20851339 - 20851562
Alignment:
| Q |
35 |
ctcttttaaattttttaaaacttgggtttcccatgatgaatgccgccccctggttatctcctcttggcaaaaacatgttgttgggtcaggaatgcacagg |
134 |
Q |
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|||||||||||| || ||||||||| |||||||||||||| || || ||||| | || ||||||||||||| || |||| ||||| ||||||| | |
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| T |
20851339 |
ctcttttaaattcttcaaaacttggacatcccatgatgaatgtcgaccattggttctgtcttcttggcaaaaaccagtgattggatcaggtatgcacaag |
20851438 |
T |
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| Q |
135 |
ttacagtcaaagctactcaatgttaaaaatgccttccggatttggaataaagcagtttttggtgatgtgcaaaatcaagtcaagttggcagctgacgagg |
234 |
Q |
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| T |
20851439 |
cttcactcaaaattgctcaatgttaagaatgccttccgggtttggaatacaacggtttttggtaatgttcagagacaggtcaagttggcggctgatgagg |
20851538 |
T |
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| Q |
235 |
ttacccgaattcagaacttgattg |
258 |
Q |
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||| |||||||||||||||||| |
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| T |
20851539 |
ttaatagaattcagaacttgattg |
20851562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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