View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19409_low_48 (Length: 271)

Name: NF19409_low_48
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19409_low_48
NF19409_low_48
[»] chr5 (2 HSPs)
chr5 (1-156)||(11194856-11195010)
chr5 (176-216)||(8175645-8175685)
[»] chr6 (1 HSPs)
chr6 (175-252)||(2504065-2504142)
[»] chr4 (4 HSPs)
chr4 (175-250)||(27141484-27141559)
chr4 (176-250)||(7401901-7401975)
chr4 (176-216)||(10090511-10090551)
chr4 (175-216)||(12159498-12159539)
[»] chr2 (2 HSPs)
chr2 (178-253)||(4295930-4296005)
chr2 (175-216)||(37246410-37246451)
[»] chr1 (3 HSPs)
chr1 (176-253)||(37645721-37645798)
chr1 (176-216)||(14097344-14097384)
chr1 (176-244)||(31471913-31471981)
[»] chr8 (2 HSPs)
chr8 (183-253)||(43617536-43617606)
chr8 (176-216)||(18028621-18028661)
[»] chr3 (6 HSPs)
chr3 (188-247)||(33752030-33752089)
chr3 (178-216)||(37409763-37409801)
chr3 (176-217)||(25449767-25449808)
chr3 (175-216)||(49822130-49822171)
chr3 (176-216)||(17470172-17470212)
chr3 (176-244)||(47148002-47148070)
[»] chr7 (1 HSPs)
chr7 (178-216)||(22733548-22733586)


Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 11194856 - 11195010
Alignment:
Q  1 tgattgattttattgtttatccaaacatggtctagtcttttcaatggaacttttcagcttttatcttcttttctttatgtgcattgtgcaaagtgtgtga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||    
T  11194856 tgattgattttattgtttatccaaacatggtctagtcttttcaatggaacttttcagcttttatcttcttttctatatgtgcattgtg-aatgtgtgtga 11194954  T
Q  101 ttgcccttgtcttgtagccatggttagagaaagtaacatattgcaattctgtgttg 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11194955 ttgcccttgtcttgtagccatggttagagaaagtaacatattgcaattctgtgttg 11195010  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 8175645 - 8175685
Alignment:
Q  176 taagaccatttacaatggtgtgtttaatgtgccattcaaca 216  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  8175645 taagaccatgtccaatggtgtgtttaatgtgccattcaaca 8175685  T

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Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 2504142 - 2504065
Alignment:
Q  175 ataagaccatttacaatggtgtgtttaatgtgccattcaacaagcattttcattgcaatggtgtgtttaatggtagtt 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2504142 ataagaccatttacaatggtgtgtttaatgtgccattcaacaagcattttcattgcaatggtgtgtttaatggtagtt 2504065  T

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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 27141484 - 27141559
Alignment:
Q  175 ataagaccatttacaatggtgtgtttaatgtgccattcaacaagcattttcattgcaatggtgtgtttaatggtag 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27141484 ataagaccatttacaatggtgtgtttaatgtgccattcaacaagcattttcattgcaatggtgtgtttaatggtag 27141559  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 176 - 250
Target Start/End: Complemental strand, 7401975 - 7401901
Alignment:
Q  176 taagaccatttacaatggtgtgtttaatgtgccattcaacaagcattttcattgcaatggtgtgtttaatggtag 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7401975 taagaccatttacaatggtgtgtttaatgtgccattcaacaagcattttcattgcaatggtgtgtttaatggtag 7401901  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 10090551 - 10090511
Alignment:
Q  176 taagaccatttacaatggtgtgtttaatgtgccattcaaca 216  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  10090551 taagaccatgtccaatggtgtgtttaatgtgccattcaaca 10090511  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 12159539 - 12159498
Alignment:
Q  175 ataagaccatttacaatggtgtgtttaatgtgccattcaaca 216  Q
    |||||||||| | ||||||||||||||||| |||||||||||    
T  12159539 ataagaccatgtccaatggtgtgtttaatgggccattcaaca 12159498  T

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Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 178 - 253
Target Start/End: Original strand, 4295930 - 4296005
Alignment:
Q  178 agaccatttacaatggtgtgtttaatgtgccattcaacaagcattttcattgcaatggtgtgtttaatggtagttg 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4295930 agaccatttacaatggtgtgtttaatgtgccattcaacaagcattttcattgcaatggtgtgtttaatggtagttg 4296005  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 37246451 - 37246410
Alignment:
Q  175 ataagaccatttacaatggtgtgtttaatgtgccattcaaca 216  Q
    |||||||||| | |||||||||||||||||||||||||||||    
T  37246451 ataagaccatgtccaatggtgtgtttaatgtgccattcaaca 37246410  T

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Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 176 - 253
Target Start/End: Original strand, 37645721 - 37645798
Alignment:
Q  176 taagaccatttacaatggtgtgtttaatgtgccattcaacaagcattttcattgcaatggtgtgtttaatggtagttg 253  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37645721 taagaccatttacaatggtgtgtttaatgtgccattcaacaggcattttcattgcaatggtgtgtttaatggtagttg 37645798  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 14097384 - 14097344
Alignment:
Q  176 taagaccatttacaatggtgtgtttaatgtgccattcaaca 216  Q
    ||||||||||||||||||| |||| ||| ||||||||||||    
T  14097384 taagaccatttacaatggtatgttgaatttgccattcaaca 14097344  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 31471981 - 31471913
Alignment:
Q  176 taagaccatttacaatggtgtgtttaatgtgccattcaacaagcattttcattgcaatggtgtgtttaa 244  Q
    ||||||||| | |||||||||||||||||   |||||||||   |||| | ||||||||||||||||||    
T  31471981 taagaccatatgcaatggtgtgtttaatgaagcattcaacaccaatttcctttgcaatggtgtgtttaa 31471913  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 43617536 - 43617606
Alignment:
Q  183 atttacaatggtgtgtttaatgtgccattcaacaagcattttcattgcaatggtgtgtttaatggtagttg 253  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43617536 atttccaatggtgtgtttaatgtgccattcaacaagcattttcattgcaatggtgtgtttaatagtagttg 43617606  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 18028621 - 18028661
Alignment:
Q  176 taagaccatttacaatggtgtgtttaatgtgccattcaaca 216  Q
    ||||||||| | |||||||||||||||| ||||||||||||    
T  18028621 taagaccatgtccaatggtgtgtttaatctgccattcaaca 18028661  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 33752089 - 33752030
Alignment:
Q  188 caatggtgtgtttaatgtgccattcaacaagcattttcattgcaatggtgtgtttaatgg 247  Q
    |||||||||||||||||||||||||||||||  |||||  | |||||||  |||||||||    
T  33752089 caatggtgtgtttaatgtgccattcaacaagatttttctctccaatggtaagtttaatgg 33752030  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 37409763 - 37409801
Alignment:
Q  178 agaccatttacaatggtgtgtttaatgtgccattcaaca 216  Q
    ||||||| | |||||||||||||||||||||||||||||    
T  37409763 agaccatgtccaatggtgtgtttaatgtgccattcaaca 37409801  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 25449767 - 25449808
Alignment:
Q  176 taagaccatttacaatggtgtgtttaatgtgccattcaacaa 217  Q
    ||||||||| | |||||||||||||||| |||||||||||||    
T  25449767 taagaccatgtccaatggtgtgtttaatctgccattcaacaa 25449808  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 49822130 - 49822171
Alignment:
Q  175 ataagaccatttacaatggtgtgtttaatgtgccattcaaca 216  Q
    |||||||||| | |||||||||||||||| ||||||||||||    
T  49822130 ataagaccatgtccaatggtgtgtttaatatgccattcaaca 49822171  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 17470212 - 17470172
Alignment:
Q  176 taagaccatttacaatggtgtgtttaatgtgccattcaaca 216  Q
    |||||||| |||||||||||| ||||||| |||||||||||    
T  17470212 taagaccacttacaatggtgtatttaatgagccattcaaca 17470172  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 47148070 - 47148002
Alignment:
Q  176 taagaccatttacaatggtgtgtttaatgtgccattcaacaagcattttcattgcaatggtgtgtttaa 244  Q
    ||||||||| | |||||||||||||||||   |||||||||   |||| | ||||||||||||||||||    
T  47148070 taagaccatatgcaatggtgtgtttaatgaagcattcaacaccaatttcctttgcaatggtgtgtttaa 47148002  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 22733548 - 22733586
Alignment:
Q  178 agaccatttacaatggtgtgtttaatgtgccattcaaca 216  Q
    ||||||| | |||||||||||||||||||||||||||||    
T  22733548 agaccatgtccaatggtgtgtttaatgtgccattcaaca 22733586  T

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