View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19409_low_49 (Length: 267)
Name: NF19409_low_49
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_low_49 |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 15 - 267
Target Start/End: Complemental strand, 3020480 - 3020228
Alignment:
| Q |
15 |
tatcatggctctcttgtccgaggaaaggagagttaaagacaaaaataagaaaagagagtgagagattacatattactaatggcaagcagagttagagaac |
114 |
Q |
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| T |
3020480 |
tatcatggctctcttgtccgaggaaaggagagttaaagacaaaaataagaaaagagagtgagagattacatattactaatggcatgcagagttagggaac |
3020381 |
T |
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| Q |
115 |
acaaattctatgaacaaattaacttgatatgttataagacactcctcttcccatgattccatcttcttgatccagaactaggcatcttaggatacaaaat |
214 |
Q |
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| T |
3020380 |
acaaattctatgaacaaattaacttgatatgttataagacactcctcttcccatgattccatcttcttgatccagaactaggcatcttaggatacaaaat |
3020281 |
T |
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| Q |
215 |
attgtgatcaatttttgcaaggccgcgactattcttaagctttggatctttgt |
267 |
Q |
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| T |
3020280 |
attgtgatcaatttttgcaaggccgcgcctattcttaagctttggatctttgt |
3020228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 15 - 267
Target Start/End: Complemental strand, 18364312 - 18364060
Alignment:
| Q |
15 |
tatcatggctctcttgtccgaggaaaggagagttaaagacaaaaataagaaaagagagtgagagattacatattactaatggcaagcagagttagagaac |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
18364312 |
tatcatggctctcttgtccgaggaaaggagagttaaagacaaaaataagaaaagagagtgagagattacatattactaatggcatgcagagttagggaac |
18364213 |
T |
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| Q |
115 |
acaaattctatgaacaaattaacttgatatgttataagacactcctcttcccatgattccatcttcttgatccagaactaggcatcttaggatacaaaat |
214 |
Q |
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| T |
18364212 |
acaaattctatgaacaaattaacttgatatgttataagacactcctcttcccatgattccatcttcttgatccagaactaggcatcttaggatacaaaat |
18364113 |
T |
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| Q |
215 |
attgtgatcaatttttgcaaggccgcgactattcttaagctttggatctttgt |
267 |
Q |
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| T |
18364112 |
attgtgatcaatttttgcaaggccgcgcctattcttaagctttggatctttgt |
18364060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 15 - 267
Target Start/End: Complemental strand, 18369625 - 18369373
Alignment:
| Q |
15 |
tatcatggctctcttgtccgaggaaaggagagttaaagacaaaaataagaaaagagagtgagagattacatattactaatggcaagcagagttagagaac |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
18369625 |
tatcatggctctcttgtccgaggaaaggagagttaaagacaaaaataagaaaagagagtgagagattacatattactaatggcatgcagagttagtgaac |
18369526 |
T |
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| Q |
115 |
acaaattctatgaacaaattaacttgatatgttataagacactcctcttcccatgattccatcttcttgatccagaactaggcatcttaggatacaaaat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18369525 |
acaaattctatgaacaaattaacttgatatgttataagacactcctcttcccatgattccatcttcttgatccagaactaggcatcttaggatacaaaat |
18369426 |
T |
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| Q |
215 |
attgtgatcaatttttgcaaggccgcgactattcttaagctttggatctttgt |
267 |
Q |
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| T |
18369425 |
attgtgatcaatttttgcaaggccgcgcctattcttaagctttggatctttgt |
18369373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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