View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19409_low_56 (Length: 250)
Name: NF19409_low_56
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 23819909 - 23820147
Alignment:
| Q |
1 |
aaaatgaaattactatcaaattttggtgtcgataattcttaacgacagatttacaaactaatttcatgttttt--gtctaaattactttcggttgtttat |
98 |
Q |
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| T |
23819909 |
aaaatgaaatcactatcaaattttggtgtcgataattcttaacaacagatttacaaactaatttcatgtttttctgtctaaattactttcggttgtttat |
23820008 |
T |
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| Q |
99 |
ttaaccttttctagtatgtttcatctgttgagttcattaacttaatcaataatcaaccactaaacatcatttgggttagtgagtaatacaaaatgatttg |
198 |
Q |
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| T |
23820009 |
ttaaccttttctagtatgtttcgtctgttgagttcattaacttaatcaataatcaactactaaacatcatttgggttagtgagtaatacaaaatgatttg |
23820108 |
T |
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| Q |
199 |
ttaatgaaggtaatcacactgctaaaagtgttgtgtata |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
23820109 |
ttaatgaaggtaatcacactgctaaaagtgttgtgtata |
23820147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 23829241 - 23829314
Alignment:
| Q |
164 |
atcatttgggttagtgagtaatacaaaatgatttgttaatgaaggtaatcacactgctaaaagtgttgtgtata |
237 |
Q |
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||||||| | ||||||| || || ||| ||||||||| || |||||||||||||||||||||||| ||| |||| |
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| T |
23829241 |
atcattttgattagtgactagtataaactgatttgttgataaaggtaatcacactgctaaaagtgatgtatata |
23829314 |
T |
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