View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19409_low_63 (Length: 232)

Name: NF19409_low_63
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19409_low_63
NF19409_low_63
[»] chr7 (3 HSPs)
chr7 (106-146)||(30101506-30101546)
chr7 (24-62)||(44933609-44933647)
chr7 (21-62)||(30101409-30101450)
[»] chr5 (2 HSPs)
chr5 (24-62)||(7119134-7119172)
chr5 (32-61)||(34444919-34444948)
[»] chr8 (1 HSPs)
chr8 (32-61)||(44996741-44996770)


Alignment Details
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 30101506 - 30101546
Alignment:
Q  106 tgatccgatcccatgagatttacaaaacaacatacaagaat 146  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  30101506 tgatccgatcccatgagatttacaaaacaacatacacgaat 30101546  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 44933647 - 44933609
Alignment:
Q  24 tcttttcatcctttaagtttgacaaaaatatcggattaa 62  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  44933647 tcttttgatcctttaaatttgacaaaaatatcggattaa 44933609  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 30101409 - 30101450
Alignment:
Q  21 aggtcttttcatcctttaagtttgacaaaaatatcggattaa 62  Q
    ||||||||| || |||||| ||||||||||||||||||||||    
T  30101409 aggtcttttgatactttaaatttgacaaaaatatcggattaa 30101450  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 7119134 - 7119172
Alignment:
Q  24 tcttttcatcctttaagtttgacaaaaatatcggattaa 62  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  7119134 tcttttgatcatttaagtttgacaaaaatatcggattaa 7119172  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 34444919 - 34444948
Alignment:
Q  32 tcctttaagtttgacaaaaatatcggatta 61  Q
    ||||||||||||||||||||||||||||||    
T  34444919 tcctttaagtttgacaaaaatatcggatta 34444948  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 44996741 - 44996770
Alignment:
Q  32 tcctttaagtttgacaaaaatatcggatta 61  Q
    ||||||||||||||||||||||||||||||    
T  44996741 tcctttaagtttgacaaaaatatcggatta 44996770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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