View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19409_low_7 (Length: 550)
Name: NF19409_low_7
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 105 - 545
Target Start/End: Complemental strand, 12560042 - 12559604
Alignment:
| Q |
105 |
tatcaacaaaattgatcaataattgtcatcaaataaaattgttaccaaaaagaaaatacaatgttcccgcgttttccgtactcaactccaaaatattatt |
204 |
Q |
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| T |
12560042 |
tatcaataaaattgatcaataattctcatcaaataaaattgttacgaaaaagaaagtacaatgttcccgcgttttccgtactcaactccaaaatattatt |
12559943 |
T |
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| Q |
205 |
tgtcttttttcttcgtgcgtgcaagttatcgacaaatttcaacacacaaacatttcttcgtaactcgcaagtaacattttgtacagttgtactatgttgt |
304 |
Q |
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| T |
12559942 |
tgtcttttttcttcgtgcgtgcaagttatcgacaaatttcaacacacaaacatttcttcgtaactcgcaagtaacattttgtacagttgtactatgttgt |
12559843 |
T |
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| Q |
305 |
aacaactccattgttgtttttaagatcttatatatataagcatacccctctttc-aaccttgttgttttctctttactttcttctacatttctcttttcc |
403 |
Q |
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| T |
12559842 |
aacaactccattgttgtttttaagatcttatatatataagcatacccctctttcaaaccttgttgttttctctttact---ttctacatttctcttttcc |
12559746 |
T |
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| Q |
404 |
tgaaaaagtgaaaaatagtaacaaaatcgattatcaccttccaacgtttcacattttcatctgggacgcgttttcttcttcattaagctttcaaaggtat |
503 |
Q |
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| T |
12559745 |
tgaaaaagtgaaaaatagtaacaaaatcgattatcaccttccaacgtttcacattttcatctgggacgcgttttcttctccattaagctttcaaaggtat |
12559646 |
T |
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| Q |
504 |
gatctttactcaattcttcatctgggtctgtttcatctcact |
545 |
Q |
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| T |
12559645 |
gatctttactcaattcttcatctgggtctgtttcatttcact |
12559604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 12560216 - 12560147
Alignment:
| Q |
17 |
tatctattatcatctaaaataaaaccaaacacaccaacattacattt-----aatgaaactaaatttaaa |
81 |
Q |
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| T |
12560216 |
tatctattatcatctaaaataaaaccaaaaacaccaacattacatttatccgaatgaaactaaatttaaa |
12560147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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