View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19409_low_8 (Length: 486)

Name: NF19409_low_8
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19409_low_8
NF19409_low_8
[»] chr5 (5 HSPs)
chr5 (46-192)||(25439531-25439677)
chr5 (258-365)||(25439358-25439465)
chr5 (268-334)||(20283749-20283815)
chr5 (292-361)||(4154704-4154773)
chr5 (56-118)||(20283556-20283614)
[»] chr6 (4 HSPs)
chr6 (370-471)||(24946705-24946806)
chr6 (271-364)||(8551569-8551662)
chr6 (366-426)||(9320380-9320441)
chr6 (419-471)||(9320450-9320502)
[»] chr4 (3 HSPs)
chr4 (370-471)||(41456548-41456649)
chr4 (385-426)||(20707431-20707472)
chr4 (292-320)||(38837589-38837617)
[»] chr7 (1 HSPs)
chr7 (271-370)||(14699639-14699738)


Alignment Details
Target: chr5 (Bit Score: 143; Significance: 6e-75; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 46 - 192
Target Start/End: Complemental strand, 25439677 - 25439531
Alignment:
Q  46 ttcttcgtcggtgagagagagaagaaagagtccagcacgatgagcgaatccggcaggtggcgatagagaagaggaaggaagcagcatgatgagtgaattt 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25439677 ttcttcgtcggtgagagagagaagaaagagtccagcacgatgagcgaatccggcaggtggcgatagagaagaggaaggaagcagcacgatgagtgaattt 25439578  T
Q  146 ggcaggtgggagacgagatcggaaaagagtgaaggtcgtggtgggtt 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  25439577 ggcaggtgggagacgagatcggaaaagagtgaaggtcgtggtgggtt 25439531  T

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Target: chr5; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 258 - 365
Target Start/End: Complemental strand, 25439465 - 25439358
Alignment:
Q  258 tggtgtgtgctatttttaccgaactgtcctggaattaaggttgaaatatcaaaattacccatggtgttgattttgtggtcagaattttgtgtctatttat 357  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  25439465 tggtgtgttctatttttaccgaactgtcctggaattaaggttgaaatatcaaaactacccatggtgttgattttgtggccagaattttgtgtctatttat 25439366  T
Q  358 catttctc 365  Q
    ||||||||    
T  25439365 catttctc 25439358  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 268 - 334
Target Start/End: Original strand, 20283749 - 20283815
Alignment:
Q  268 tatttttaccgaactgtcctggaattaaggttgaaatatcaaaattacccatggtgttgattttgtg 334  Q
    |||||||||| ||||| |||||| ||||||| ||||| |||||| ||||||||||||||||||||||    
T  20283749 tatttttaccaaactgccctggatttaaggtggaaatgtcaaaactacccatggtgttgattttgtg 20283815  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 361
Target Start/End: Original strand, 4154704 - 4154773
Alignment:
Q  292 ttaaggttgaaatatcaaaattacccatggtgttgattttgtggtcagaattttgtgtctatttatcatt 361  Q
    |||||||||||||| ||||||| || ||||||||| | |||||   | ||||||||||||| ||||||||    
T  4154704 ttaaggttgaaataacaaaattgcctatggtgttggtattgtgtctaaaattttgtgtctagttatcatt 4154773  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 20283556 - 20283614
Alignment:
Q  56 gtgagagagagaagaaagagtccagcacgatgagcgaatccggcaggtggcgatagagaagag 118  Q
    |||||||||||||||  ||||||| |||||||||  |||||||||||  ||||||||||||||    
T  20283556 gtgagagagagaaga--gagtccatcacgatgag--aatccggcaggcagcgatagagaagag 20283614  T

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Target: chr6 (Bit Score: 98; Significance: 5e-48; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 370 - 471
Target Start/End: Original strand, 24946705 - 24946806
Alignment:
Q  370 aataaatatctaggaatatgtacagttattcatgcagctagaagatcaatagttaatcacatttatgtaggaactagagagctgattaatgtccttgtaa 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24946705 aataaatatctaggaatatgtacagttattcatgcagctagaagatcaatagttaatcacatttatgtaggaactagaaagctgattaatgtccttgtaa 24946804  T
Q  470 ct 471  Q
    ||    
T  24946805 ct 24946806  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 271 - 364
Target Start/End: Complemental strand, 8551662 - 8551569
Alignment:
Q  271 ttttaccgaactgtcctggaattaaggttgaaatatcaaaattacccatggtgttgattttgtggtcagaattttgtgtctatttatcatttct 364  Q
    ||||||| ||||| ||| || || ||||||||||| ||||||| |||||||||||| | |||||   | ||||||||||||| |||||||||||    
T  8551662 ttttaccaaactgcccttgatttgaggttgaaataacaaaattgcccatggtgttggtattgtgtctaaaattttgtgtctaattatcatttct 8551569  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 426
Target Start/End: Original strand, 9320380 - 9320441
Alignment:
Q  366 ataaaataaatatct-aggaatatgtacagttattcatgcagctagaagatcaatagttaat 426  Q
    |||||||||||| || ||||||||||| |||||||||||||  |||||||||||||||||||    
T  9320380 ataaaataaataccttaggaatatgtatagttattcatgcaagtagaagatcaatagttaat 9320441  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 419 - 471
Target Start/End: Original strand, 9320450 - 9320502
Alignment:
Q  419 tagttaatcacatttatgtaggaactagagagctgattaatgtccttgtaact 471  Q
    |||| |||||||||||||||||||| ||| |||| ||||||||||||||||||    
T  9320450 tagtaaatcacatttatgtaggaaccagaaagcttattaatgtccttgtaact 9320502  T

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Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 370 - 471
Target Start/End: Complemental strand, 41456649 - 41456548
Alignment:
Q  370 aataaatatctaggaatatgtacagttattcatgcagctagaagatcaatagttaatcacatttatgtaggaactagagagctgattaatgtccttgtaa 469  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||    
T  41456649 aataaatacctaggaatatgtacaattattcatgcagctagaagatcaatagttaatcacatttatgtaggaactagaaagttgattaatgttcttgtaa 41456550  T
Q  470 ct 471  Q
    ||    
T  41456549 ct 41456548  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 385 - 426
Target Start/End: Original strand, 20707431 - 20707472
Alignment:
Q  385 atatgtacagttattcatgcagctagaagatcaatagttaat 426  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  20707431 atatgtacagttattgatgtagctagaagatcaatagttaat 20707472  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 320
Target Start/End: Original strand, 38837589 - 38837617
Alignment:
Q  292 ttaaggttgaaatatcaaaattacccatg 320  Q
    |||||||||||||||||||||||||||||    
T  38837589 ttaaggttgaaatatcaaaattacccatg 38837617  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 370
Target Start/End: Original strand, 14699639 - 14699738
Alignment:
Q  271 ttttaccgaactgtcctggaattaaggttgaaatatcaaaattacccatggtgttgattttgtggtcagaattttgtgtctatttatcatttctcataaa 370  Q
    ||||||| ||||| ||| || || ||||||||||| ||||||| |||||||||||| | |||||   | ||||||||||||| |||||||| ||||||||    
T  14699639 ttttaccaaactgccctcgatttgaggttgaaataacaaaattgcccatggtgttggtattgtgtctaaaattttgtgtctagttatcattcctcataaa 14699738  T

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