View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19409_low_9 (Length: 476)

Name: NF19409_low_9
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19409_low_9
NF19409_low_9
[»] chr6 (4 HSPs)
chr6 (20-461)||(5921344-5921785)
chr6 (25-259)||(26967837-26968071)
chr6 (187-235)||(16733009-16733057)
chr6 (121-259)||(14813143-14813281)
[»] chr5 (4 HSPs)
chr5 (18-459)||(20325648-20326089)
chr5 (285-432)||(15447253-15447400)
chr5 (188-266)||(29125294-29125372)
chr5 (347-395)||(26470445-26470493)
[»] chr3 (4 HSPs)
chr3 (193-259)||(19588505-19588571)
chr3 (193-259)||(12283720-12283786)
chr3 (91-233)||(34503758-34503900)
chr3 (188-385)||(49728189-49728386)
[»] chr1 (2 HSPs)
chr1 (193-259)||(52776100-52776166)
chr1 (190-259)||(2358144-2358213)
[»] chr2 (4 HSPs)
chr2 (193-365)||(29497877-29498049)
chr2 (214-433)||(34893126-34893345)
chr2 (349-395)||(13129139-13129185)
chr2 (188-257)||(8309856-8309925)
[»] scaffold0329 (1 HSPs)
scaffold0329 (193-259)||(9429-9495)
[»] chr4 (4 HSPs)
chr4 (193-259)||(22178736-22178802)
chr4 (190-233)||(10636536-10636579)
chr4 (121-259)||(5237685-5237823)
chr4 (313-429)||(25226927-25227044)
[»] chr8 (1 HSPs)
chr8 (190-233)||(188136-188179)


Alignment Details
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 20 - 461
Target Start/End: Complemental strand, 5921785 - 5921344
Alignment:
Q  20 acgtgcatccaagtgaaggtccttcatctttaatcgtttctcctaagcttgatggttccagttatctagcttggaatcgttccatgaagcgttctctagg 119  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5921785 acgtgaatccaagtgaaggtccttcatctttaattgtttctcctaagcttgatggttccagttatctagcttggaatcgttccatgaagcgttctctagg 5921686  T
Q  120 cacgaagaacaagcttggattcaccaatggctccattgaacaacctgatcttgatgatcttaaccggtctgcatgggaacgttgcaaccatttggttcaa 219  Q
    ||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5921685 cacgaagaacaagcttggattcatcaatggctccattgaacaacccaatcttgatgatcttaaccggtctgcatgggaatgttgcaaccatttggttcaa 5921586  T
Q  220 tcttggctcatcaatttcgtttcagattctattgctcaaattgttgtcttctttgtcattgcatatgaggtatggcaagatctccatgaaagtttctcta 319  Q
    |||||||||||||||| ||||||| ||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||| || ||||||    
T  5921585 tcttggctcatcaattccgtttcaaattctattgctcaaactgttgtcttctatgtcattgcttatgaggtatggcaagatctccatgaacgtatctcta 5921486  T
Q  320 aggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattgaaagcgtt 419  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5921485 aggttgatcgcatttgtattgcaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattgaaagcgtt 5921386  T
Q  420 atgggaagaactttcaccacatagaccaattccatcttgtat 461  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  5921385 atgggaagaactttcatcacatagaccaattccatcttgtat 5921344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 25 - 259
Target Start/End: Original strand, 26967837 - 26968071
Alignment:
Q  25 catccaagtgaaggtccttcatctttaatcgtttctcctaagcttgatggttccagttatctagcttggaatcgttccatgaagcgttctctaggcacga 124  Q
    ||||| |||||||||||||| ||  | || |||||||| || |||||||||||||  ||| | |  ||||||| |||||||||||||||  | || || |    
T  26967837 catccgagtgaaggtccttcttccctcattgtttctcccaaacttgatggttccaactatgtggtgtggaatcattccatgaagcgttcattgggaacaa 26967936  T
Q  125 agaacaagcttggattcaccaatggctccattgaacaacctgatcttgatgatcttaaccggtctgcatgggaacgttgcaaccatttggttcaatcttg 224  Q
    ||||||| |||| ||||| ||| || ||||||     |||||| ||||| |||||||||||   ||  ||||||||  |||| || ||||||||||||||    
T  26967937 agaacaaacttgaattcaacaacggatccattcctacacctgaccttgaagatcttaaccgtagtgtttgggaacgcagcaatcacttggttcaatcttg 26968036  T
Q  225 gctcatcaatttcgtttcagattctattgctcaaa 259  Q
    |||||| ||||  |||||| |||| ||||||||||    
T  26968037 gctcattaattctgtttcatattccattgctcaaa 26968071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 16733057 - 16733009
Alignment:
Q  187 tctgcatgggaacgttgcaaccatttggttcaatcttggctcatcaatt 235  Q
    |||||||||||||| || || |||||||| |||||||||||||||||||    
T  16733057 tctgcatgggaacggtgtaatcatttggtgcaatcttggctcatcaatt 16733009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 259
Target Start/End: Original strand, 14813143 - 14813281
Alignment:
Q  121 acgaagaacaagcttggattcaccaatggctccattgaacaacctgatcttgatgatcttaaccggtctgcatgggaacgttgcaaccatttggttcaat 220  Q
    ||||||||||||||||| |||| |||||| ||||||      ||||||   |||||| | |||||  | ||||||||||| || || |||||||||||||    
T  14813143 acgaagaacaagcttggtttcatcaatggttccattcctatgcctgatgaagatgatttgaaccgcacagcatgggaacgctgtaatcatttggttcaat 14813242  T
Q  221 cttggctcatcaatttcgtttcagattctattgctcaaa 259  Q
    ||||||| ||||| |  ||||| || || ||||||||||    
T  14813243 cttggcttatcaactctgtttctgagtccattgctcaaa 14813281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 459
Target Start/End: Complemental strand, 20326089 - 20325648
Alignment:
Q  18 ttacgtgcatccaagtgaaggtccttcatctttaatcgtttctcctaagcttgatggttccagttatctagcttggaatcgttccatgaagcgttctcta 117  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20326089 ttacgttcatccaagtgaaggtccttcatcgttaatcgtttctcctaaacttgatggttccaattatctagcttggaatcgttccatgaagcgttctcta 20325990  T
Q  118 ggcacgaagaacaagcttggattcaccaatggctccattgaacaacctgatcttgatgatcttaaccggtctgcatgggaacgttgcaaccatttggttc 217  Q
    ||||| |||||||||||||| || | ||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| ||   |||||| |    
T  20325989 ggcacaaagaacaagcttggttttatcaatggctcaattgaacaacctgatcttgatgatcttaatcgatctgcatgggaacgttgtaattttttggtgc 20325890  T
Q  218 aatcttggctcatcaatttcgtttcagattctattgctcaaattgttgtcttctttgtcattgcatatgaggtatggcaagatctccatgaaagtttctc 317  Q
    |||||||| | |||||||  |||||||||||||||||||||| ||||||||| | || || ||| |||||||||||||||||||| |||||| |||| ||    
T  20325889 aatcttggataatcaattctgtttcagattctattgctcaaactgttgtcttttatgacactgcttatgaggtatggcaagatcttcatgaacgtttttc 20325790  T
Q  318 taaggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattgaaagcg 417  Q
    ||||| |||||| ||||||||| |||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |     
T  20325789 taaggctgatcgtattcgtattgcaaatttgcgttcttccattaacaacttgaaacaaggtgcaaaatctgttcttgagtattttactgaattgaaatct 20325690  T
Q  418 ttatgggaagaactttcaccacatagaccaattccatcttgt 459  Q
    |||||||||||||||||| |||||||||| ||||||||||||    
T  20325689 ttatgggaagaactttcatcacatagacctattccatcttgt 20325648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 432
Target Start/End: Original strand, 15447253 - 15447400
Alignment:
Q  285 tgaggtatggcaagatctccatgaaagtttctctaaggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaa 384  Q
    |||||| |||||||||||  | ||  |||| || || |||||||| ||| | |||  |||||| ||||| || ||||||||| | ||||||||| ||| |    
T  15447253 tgaggtttggcaagatcttaaggagcgtttttcaaaagttgatcgtattagaattgaaaatttacgttcctccattaacaatctcaaacaaggttcaata 15447352  T
Q  385 tatgttcttgagtattttactgaattgaaagcgttatgggaagaactt 432  Q
    | |||| | |||||||| ||||| |||||||| |||||||||||||||    
T  15447353 tttgttttggagtatttcactgagttgaaagctttatgggaagaactt 15447400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 266
Target Start/End: Original strand, 29125294 - 29125372
Alignment:
Q  188 ctgcatgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaattgttgt 266  Q
    ||||||||||||| ||||| |||||||| || |||||||| ||||| | |||||| ||||| ||||| |||| ||||||    
T  29125294 ctgcatgggaacgctgcaatcatttggtgcagtcttggcttatcaactccgtttctgattcaattgcacaaactgttgt 29125372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 26470445 - 26470493
Alignment:
Q  347 tgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttga 395  Q
    |||||||||| ||||||||| ||||||||||||  |||| |||||||||    
T  26470445 tgcgttcttccattaacaatctgaaacaaggtgataaatctgttcttga 26470493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 19588571 - 19588505
Alignment:
Q  193 tgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaa 259  Q
    |||||||| |||||||||||||| ||||||||||| || |||| |||||| ||||| ||||||||||    
T  19588571 tgggaacgatgcaaccatttggtacaatcttggcttattaattccgtttctgattcaattgctcaaa 19588505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 259
Target Start/End: Original strand, 12283720 - 12283786
Alignment:
Q  193 tgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaa 259  Q
    |||||||| |||||||||||||| |||||||||||||| ||||  ||||  ||||| ||||||||||    
T  12283720 tgggaacgatgcaaccatttggtacaatcttggctcattaattcagtttttgattcaattgctcaaa 12283786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 233
Target Start/End: Complemental strand, 34503900 - 34503758
Alignment:
Q  91 tggaatcgttccatgaagcgttctctaggcacgaagaacaagcttggattcaccaatggctccattgaacaacctgatcttgatgatcttaaccggtctg 190  Q
    ||||||| ||||||||||||| || || | |||||||||||  ||||||||| |||||| ||||||     |||||||||||| |||||||| ||   ||    
T  34503900 tggaatcattccatgaagcgtgctttaagaacgaagaacaaaattggattcatcaatggttccattcccacacctgatcttgaagatcttaatcgcaatg 34503801  T
Q  191 catgggaacgttgcaaccatttggttcaatcttggctcatcaa 233  Q
    | | ||||| ||| || || |||||||||| |||||| |||||    
T  34503800 cttaggaacattgtaatcacttggttcaatattggcttatcaa 34503758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 188 - 385
Target Start/End: Complemental strand, 49728386 - 49728189
Alignment:
Q  188 ctgcatgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaattgttgtcttctttgtcattgcatatga 287  Q
    |||| |||||||||||||| ||  | ||||||||||||||||||||||  ||||| ||||| || || ||||   |||| |||| ||  | ||||  |||    
T  49728386 ctgcttgggaacgttgcaatcaccttgttcaatcttggctcatcaattcagtttctgattccatcgcgcaaaccattgttttctgtgatactgcacttga 49728287  T
Q  288 ggtatggcaagatctccatgaaagtttctctaaggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaat 385  Q
    ||| ||||  ||  |  | ||| |||||| |||  ||||||||||||| ||| ||||| |||||||||| || |||||| | ||||| ||||||||||    
T  49728286 ggtttggcttgacttgaaagaacgtttctttaaaattgatcgcattcgcattgcaaatatgcgttcttcaatcaacaatctcaaacagggtgcaaaat 49728189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 193 - 259
Target Start/End: Original strand, 52776100 - 52776166
Alignment:
Q  193 tgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaa 259  Q
    |||||||| |||||||||||||| |||||||||||||| ||||  ||||| ||||| ||||||||||    
T  52776100 tgggaacgatgcaaccatttggtacaatcttggctcattaattcagtttctgattcaattgctcaaa 52776166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 2358144 - 2358213
Alignment:
Q  190 gcatgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaa 259  Q
    ||||||||||| || || |||||||||||||||||||| ||||| |  ||||| || || ||||||||||    
T  2358144 gcatgggaacgctgtaatcatttggttcaatcttggcttatcaactctgtttctgagtccattgctcaaa 2358213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 365
Target Start/End: Original strand, 29497877 - 29498049
Alignment:
Q  193 tgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaattgttgtcttctttgtcattgcatatgaggtat 292  Q
    |||||||| ||||||||| |||| ||||||||||| |  ||||| ||||| ||||  |||||||||| | |||| |||| ||  | ||| | ||| || |    
T  29497877 tgggaacgatgcaaccatgtggtacaatcttggcttactaattttgtttctgatttcattgctcaaactattgttttctatgatactgcctttgatgttt 29497976  T
Q  293 ggcaagatctccatgaaagtttctctaaggttgatcgcattcgtattacaaatttgcgttcttctattaacaa 365  Q
    |||| ||||| || ||||| || |||||||||||||| || || ||| | ||| |||||||| | ||||||||    
T  29497977 ggcatgatctgcaagaaagattttctaaggttgatcgtatacgcattgctaatctgcgttctaccattaacaa 29498049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 433
Target Start/End: Complemental strand, 34893345 - 34893126
Alignment:
Q  214 gttcaatcttggctcatcaatttcgtttcagattctattgctcaaattgttgtcttctttgtcattgcatatgaggtatggcaagatctccatgaaagtt 313  Q
    ||||||||||||| ||||||||  |||||  |||||||||| ||||   | |||||   || || ||| | ||| || |||||||||||| |  || | |    
T  34893345 gttcaatcttggcccatcaattatgtttctaattctattgcgcaaacgatcgtctttcatgacactgcctttgatgtttggcaagatctcaacaaatgat 34893246  T
Q  314 tctctaaggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattgaa 413  Q
    | ||||| |||||||| ||||| ||| ||||| | ||||| || ||||||||  | || |||||| | |||| |||  | ||||||||||||||||||||    
T  34893245 tttctaaagttgatcgtattcgcattgcaaatctacgttcctccattaacaacctcaagcaaggttccaaatctgtcttagagtattttactgaattgaa 34893146  T
Q  414 agcgttatgggaagaacttt 433  Q
    |||  | |||||||||||||    
T  34893145 agctctttgggaagaacttt 34893126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 395
Target Start/End: Original strand, 13129139 - 13129185
Alignment:
Q  349 cgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttga 395  Q
    |||||||| ||||||||||||||||||||||  |||| |||||||||    
T  13129139 cgttcttccattaacaatttgaaacaaggtgataaatctgttcttga 13129185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 257
Target Start/End: Original strand, 8309856 - 8309925
Alignment:
Q  188 ctgcatgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctca 257  Q
    ||||||||||||| ||||| ||| | ||||||||||||||||| || || ||||| ||||| ||| ||||    
T  8309856 ctgcatgggaacggtgcaatcatctcgttcaatcttggctcattaactttgtttctgattcaatttctca 8309925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 259
Target Start/End: Original strand, 9429 - 9495
Alignment:
Q  193 tgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaa 259  Q
    |||||||| |||||||||||||| |||||||||||||| ||||  || || ||||| ||||||||||    
T  9429 tgggaacgatgcaaccatttggtacaatcttggctcattaattcagtctctgattcaattgctcaaa 9495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 22178802 - 22178736
Alignment:
Q  193 tgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaa 259  Q
    |||||||| |||||||||||||| |||||||||||||| ||||  || || ||||| ||||||||||    
T  22178802 tgggaacgatgcaaccatttggtacaatcttggctcattaattcagtctctgattcaattgctcaaa 22178736  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 233
Target Start/End: Original strand, 10636536 - 10636579
Alignment:
Q  190 gcatgggaacgttgcaaccatttggttcaatcttggctcatcaa 233  Q
    ||||||||||| ||||| |||||||||||||||||||| |||||    
T  10636536 gcatgggaacgatgcaatcatttggttcaatcttggcttatcaa 10636579  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 259
Target Start/End: Original strand, 5237685 - 5237823
Alignment:
Q  121 acgaagaacaagcttggattcaccaatggctccattgaacaacctgatcttgatgatcttaaccggtctgcatgggaacgttgcaaccatttggttcaat 220  Q
    ||||||||||||||||| |||| |||||| ||||||      ||||||   |||||| | |||||  | ||||||||||| || || |||||||||||||    
T  5237685 acgaagaacaagcttggtttcatcaatggttccattcctatgcctgatgaagatgatttgaaccgcacagcatgggaacgctgtaatcatttggttcaat 5237784  T
Q  221 cttggctcatcaatttcgtttcagattctattgctcaaa 259  Q
    ||||||| ||||| |  ||||| || || ||||||||||    
T  5237785 cttggcttatcaactctgtttctgagtccattgctcaaa 5237823  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 429
Target Start/End: Original strand, 25226927 - 25227044
Alignment:
Q  313 ttctctaaggttgatcgcattcgta-ttacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattg 411  Q
    ||||||||| |||||||| || | | || ||||| ||||||||||  |||||||| | | ||||||| | ||||||||  | |||||||| | |||| ||    
T  25226927 ttctctaagattgatcgccttagaaattgcaaatatgcgttcttcctttaacaatcttagacaaggtaccaaatatgtgttagagtatttcattgaaatg 25227026  T
Q  412 aaagcgttatgggaagaa 429  Q
    ||||| ||||||||||||    
T  25227027 aaagctttatgggaagaa 25227044  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 233
Target Start/End: Original strand, 188136 - 188179
Alignment:
Q  190 gcatgggaacgttgcaaccatttggttcaatcttggctcatcaa 233  Q
    ||||||||||| ||||| |||||||||||||||||||| |||||    
T  188136 gcatgggaacgatgcaatcatttggttcaatcttggcttatcaa 188179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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