View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1940_high_1 (Length: 688)
Name: NF1940_high_1
Description: NF1940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1940_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 644; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 17 - 676
Target Start/End: Complemental strand, 47050647 - 47049985
Alignment:
| Q |
17 |
cacagataagaagagacaaaagagtgatggaaacacctccctaggtt-cgaatctctaatataatatgaacttaagaaaaacacaagcatcttttaattt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47050647 |
cacagataagaagagacaaaagagtgatggaaacacctccctaggtttcgaatctctaatataatatgaacttaagaaaaacacaagcatcttttaattt |
47050548 |
T |
|
| Q |
116 |
atgattgtgttatttgaacgtcaaaatatagacacgtgacaccctatatattttatctcgatgacttgcacacatttcaaaagtacaca--aaaaataaa |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47050547 |
atgattgtgttatttgaacgtcaaaatatagacacgtgacaccctatatattttatctcgatgacttgcacacatttcaaaagtacacataaaaaataaa |
47050448 |
T |
|
| Q |
214 |
agacaatgttttttaatatatctccactatatgaaaatgtatttggctaattggccaatgtcttataatccactttcctaataaaataattgagaaaaac |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47050447 |
agacaatgttttttaatatatctccactatatgaaaatgtatttggctaattggccaatgtcttataatccactttcctaataaaataattgagaaaaac |
47050348 |
T |
|
| Q |
314 |
tcaatcatatatagtgatatctactttttgctacagagaaaccattatatataactgacaatcactagtgacacaaatgctctgctagcaagggagtgag |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47050347 |
tcaatcatatatagtgatatctactttttgctacagagaaaccattatatataactgacaatcactagtgacacaaatgctctgctagcaagggagtgag |
47050248 |
T |
|
| Q |
414 |
agaaccataaaaaaccaagtgtggagttgtatctgaatacttgtttcagtttgcattgtgttcgtacaaaatgattgtgaaattgggcttcttggtgatt |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47050247 |
agaaccataaaaaaccaagtgtggagttgtatctgaatacttgtttcagtttgcattgtgttcgtacaaaatgattgtgaaattgggcttcttggtgatt |
47050148 |
T |
|
| Q |
514 |
ttggggatgactttggcagtaaatgcccaactgaaaactgggttttattcaaattcatgtccaacagctgagtccatcgtacggtccacagttgtatctt |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47050147 |
ttggggatgactttggcagtaaatgcccaactgaaaactgggttttattcaaattcatgtccaacagctgagtccatcgtacggtccacagttgtatctt |
47050048 |
T |
|
| Q |
614 |
actttaacaaagatccaaccattgctcctggcctgctcagacttcatttccatgattgctttg |
676 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47050047 |
actttaacaaagatccaaccattgctcctggcctgctcagacttcatttccatgattgctttg |
47049985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 288 - 676
Target Start/End: Complemental strand, 47053503 - 47053118
Alignment:
| Q |
288 |
ttcctaataaaataattgagaaaaactcaatcatatatagtgatatctactttttgctacagagaaaccattatatataactgacaatcactagtgacac |
387 |
Q |
| |
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|||| |||||||||||| | |||| || |||||| | |||||||||| |||| ||| || |||||||||||||||||||| ||||| |||| | |
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| T |
47053503 |
ttccgaataaaataattaaaaaaagctaaatcatttgacgtgatatctaattttccctagtgacaaaccattatatataactgaaaatca---gtgataa |
47053407 |
T |
|
| Q |
388 |
aaatgctctgctagcaagggagtgagagaaccataaaaaaccaagtgtggagttgtatctgaatacttgtttcagtttgcattgtgt--tcgtacaaaat |
485 |
Q |
| |
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|||| ||||| ||||||||||||||| ||| || |||| |||| ||| |||||| ||||||| |||||||||||||||||||| | | || |||||| |
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| T |
47053406 |
aaattatctgcaagcaagggagtgaga-aactatcaaaa-ccaacagtgaagttgtgtctgaattcttgtttcagtttgcattgtatagtagtccaaaat |
47053309 |
T |
|
| Q |
486 |
gattgtgaaattgggcttcttggtgattttggggatgactttggcagtaaatgcccaactgaaaactgggttttattcaaattcatgtccaacagctgag |
585 |
Q |
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||||||| |||||| | | | |||||||||| ||||||||||||||| | ||||||||||||| ||||||||| |||||||||||||||||||||| | |
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| T |
47053308 |
gattgtgcgattgggatccctagtgattttggtgatgactttggcagttgaagcccaactgaaaagtgggttttaatcaaattcatgtccaacagctgcg |
47053209 |
T |
|
| Q |
586 |
tccatcgtacggtccacagttgtatcttactttaacaaagatccaaccattgctcctggcctgctcagacttcatttccatgattgctttg |
676 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| |
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| T |
47053208 |
cccatcttacggtccacagttgtatcttactttaacaaagatccaaccattgatccaggcctgctcaggtttcatttccatgattgctttg |
47053118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 236 - 272
Target Start/End: Complemental strand, 47053543 - 47053507
Alignment:
| Q |
236 |
tccactatatgaaaatgtatttggctaattggccaat |
272 |
Q |
| |
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|||||| |||||| ||||||||||||||||||||||| |
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| T |
47053543 |
tccactttatgaagatgtatttggctaattggccaat |
47053507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 118 - 150
Target Start/End: Original strand, 16764363 - 16764395
Alignment:
| Q |
118 |
gattgtgttatttgaacgtcaaaatatagacac |
150 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
16764363 |
gattgtgttatttgaacgtcaaaatatatacac |
16764395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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