View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1940_high_2 (Length: 472)
Name: NF1940_high_2
Description: NF1940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1940_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 59 - 459
Target Start/End: Complemental strand, 19098919 - 19098536
Alignment:
| Q |
59 |
taagtatcctcaactaggatcagctttttctctaactatttcaaaggaataatatagtaaaatatccagcaattcaatatatccagcaaactaacatgaa |
158 |
Q |
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| T |
19098919 |
taagtatcctcaactaggatcagctttttctctaactatttcaaaggaataagatagtaaaatatccagcaa-----------------actaacatgaa |
19098837 |
T |
|
| Q |
159 |
aatcaacttatattagatccaaactttgatatcaagccaaacaaaattctactactcataaatcaatctaaagcaaaagtcaaaaacatgtaactcactc |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
19098836 |
aatcaacttatattagatccaaactttgatatcaagccaaacaaaattctactactcataaatcaatctaaagcaaaagtcaaaaacatgtaactcacac |
19098737 |
T |
|
| Q |
259 |
ccatcaccatttaaattttaaactaaatactgtctagtaaatcggacaccaaaagataaaaagcacatatgatgcattttttgattcatttttggccaaa |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19098736 |
ccatcaccatttaaattttaaactaaatactgtctagtaaatcggacaccaaaaaataaaaagcacatatgatgcattttttgattcatttttggccaaa |
19098637 |
T |
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| Q |
359 |
agtgattctggaggcttaaaatcaattttcatacgttggatttagaattgattttatctcaagaatcgattctatcttgaagctaagatttgtagttttt |
458 |
Q |
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| T |
19098636 |
agtgattctggaggcttaaaatcaattttcatatgttggatttagaattgattttatctcaagaatcgattctatcttgaagctaagatttgtagttttt |
19098537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 405 - 460
Target Start/End: Complemental strand, 7298421 - 7298366
Alignment:
| Q |
405 |
attgattttatctcaagaatcgattctatcttgaagctaagatttgtagtttttga |
460 |
Q |
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| T |
7298421 |
attgatgttgtctccagaatcgattctaacttgaagctaggatttgtagtttttga |
7298366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 459
Target Start/End: Complemental strand, 29240560 - 29240502
Alignment:
| Q |
401 |
tagaattgattttatctcaagaatcgattctatcttgaagctaagatttgtagtttttg |
459 |
Q |
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| T |
29240560 |
tagaattgattttacctccagagttgattctaacttgaagctaaaatttgaagtttttg |
29240502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 461
Target Start/End: Original strand, 26280582 - 26280641
Alignment:
| Q |
401 |
tagaattgattttatctcaagaatcgattctatcttgaagctaagatttgtagtttttgat |
461 |
Q |
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| T |
26280582 |
tagaattgattttgcctcaagaattgattcca-cttgaagctagaatttgtagtttttgat |
26280641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 4554314 - 4554351
Alignment:
| Q |
404 |
aattgattttatctcaagaatcgattctatcttgaagc |
441 |
Q |
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| T |
4554314 |
aattgattttgtctcaagaattgattctatcttgaagc |
4554351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 453
Target Start/End: Original strand, 25319024 - 25319076
Alignment:
| Q |
401 |
tagaattgattttatctcaagaatcgattctatcttgaagctaagatttgtag |
453 |
Q |
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||||||||||||| |||| ||||| ||||||| ||||||| || ||||||||| |
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| T |
25319024 |
tagaattgattttgtctccagaattgattctaacttgaaggtaggatttgtag |
25319076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 461
Target Start/End: Original strand, 6021781 - 6021840
Alignment:
| Q |
401 |
tagaattgattttatctcaagaatcgattctatcttgaagctaagatttgtagtttttgat |
461 |
Q |
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||||||||||||| ||| ||||||||||||| |||||||||| ||| ||||| ||||||| |
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| T |
6021781 |
tagaattgattttgcctctagaatcgattcta-cttgaagctaggatatgtagcttttgat |
6021840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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