View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1940_high_7 (Length: 216)
Name: NF1940_high_7
Description: NF1940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1940_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 39641752 - 39641556
Alignment:
| Q |
12 |
gatgaacagattaaggagtgtgaagagcttgggattttggttgatagagatgatcagggtactctgcttcagatttttactaagcccattggagataggt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39641752 |
gatgaacagattaaggagtgtgaagagcttgggattttggttgatagagatgatcagggtactctgcttcagatttttactaagcccattggagataggt |
39641653 |
T |
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| Q |
112 |
atat---------atatgctctatttgaatcatttcatatcacacatataacatacatgccaatttattaacttgaattcattattagtagcatacc |
199 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39641652 |
atatatattatatatatgctctatttgaatcatttcatatcatacatataacatacatgccaatttattaacttgaattcattattagtagcatacc |
39641556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 39680497 - 39680625
Alignment:
| Q |
12 |
gatgaacagattaaggagtgtgaagagcttgggattttggttgatagagatgatcagggtactctgcttcagatttttactaagcccattggagataggt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| |
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| T |
39680497 |
gatgaacagattaaggagtgtgaagagcttgggattctggttgatagagatgatcagggtactctgcttcagatttttaccaagcctattggtgataggt |
39680596 |
T |
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| Q |
112 |
atatatatgctctatttgaatcatttcat |
140 |
Q |
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|| |||||||||| || ||||||| |||| |
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| T |
39680597 |
atgtatatgctcttttagaatcatatcat |
39680625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 39637123 - 39637000
Alignment:
| Q |
12 |
gatgaacagattaaggagtgtgaagagctt-gggattttggttgatagagatgatcagggtactctgcttcagatttttactaagcccattggagatagg |
110 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||| |
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| T |
39637123 |
gatgaacagattaaggagtgtgaagagctttgggattttggttgatagagatgatcagggtactttgcttcagatttttactaagcctattggtgatagg |
39637024 |
T |
|
| Q |
111 |
tatatatatgctctatttgaatcat |
135 |
Q |
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||| || ||| ||| |||||||||| |
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| T |
39637023 |
tatgta-atgatctttttgaatcat |
39637000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 7055614 - 7055513
Alignment:
| Q |
12 |
gatgaacagattaaggagtgtgaagagcttgggattttggttgatagagatgatcagggtactctgcttcagatttttactaagcccattggagataggt |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| |||||||| |||||||||||| |
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| T |
7055614 |
gatgaacagattaaggagtgtgaagagcttggaattttggttgatagagatgatcagggtactattcttcagattttcactaagcctgttggagataggt |
7055515 |
T |
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| Q |
112 |
at |
113 |
Q |
| |
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|| |
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|
| T |
7055514 |
at |
7055513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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