View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1940_low_3 (Length: 462)
Name: NF1940_low_3
Description: NF1940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1940_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 12 - 446
Target Start/End: Original strand, 3798046 - 3798480
Alignment:
| Q |
12 |
atgaatacaaagtacaaatatttcatccaagaaccattcttctgtcctaaaaatatttgcaattcttatcataataatataattattttctagctagcaa |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3798046 |
atgaatacaaagtacaaatatttcatccaagaaccattcttctgtcctaaaaatatttgcaattcttgtcataataatataattattttctagctagcaa |
3798145 |
T |
|
| Q |
112 |
caaagcaaatgagtatattgcctcattttcttgttataccatttccagttcaaggacatgttaacccccttatgcaattctcacaagttctagccaaaca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3798146 |
caaagcaaatgagtatattgcctcattttcttgttataccatttccagttcaaggacatgttaacccccttatgcaattctcacaagttctagccaaaca |
3798245 |
T |
|
| Q |
212 |
tggttgcaaggtcacttttctacataccgagtttaaccataaacgatcgaaaaccggtgttttcgagcaagacaagatacaagtggtgacactcccagat |
311 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3798246 |
tggttgcaaggtcacttttctacatactgagtttaaccataaacgatcgaaaaccggtgttttcgagcaagacaagatacaagtgatgacactcccagat |
3798345 |
T |
|
| Q |
312 |
ggtttggaacctgaagatgatagaagtgatataaagaaagttattttatctattaaaagcaccatgccttctaaacttccaaagcttatagaagaagtta |
411 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3798346 |
ggtttggaatctgaagatgatagaagtgatataaagaaagttattttatctattaaaagcaccatgccttctaaacttccaaagcttatagaagaagtta |
3798445 |
T |
|
| Q |
412 |
atgctttgaatgttcacaacaagatcaattgtatt |
446 |
Q |
| |
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| T |
3798446 |
atgctttgaatgttgagagcaagatcaattgtatt |
3798480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 12 - 446
Target Start/End: Complemental strand, 3791306 - 3790877
Alignment:
| Q |
12 |
atgaatacaaagtacaaatatttcatccaagaaccattcttctgtcctaaaaatatttgcaattcttatcataataatataattattttctagctagcaa |
111 |
Q |
| |
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||||||||||||||||||||||||| |||||| || |||||||||||||||| ||||| |||||||| ||| |||||||||||||||||| ||| || |
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| T |
3791306 |
atgaatacaaagtacaaatatttcacccaagagccgttcttctgtcctaaaa-tattttcaattcttgtcacaataatataattattttccagc----aa |
3791212 |
T |
|
| Q |
112 |
caaagcaaatgagtatattgcctcattttcttgttataccatttccagttcaaggacatgttaacccccttatgcaattctcacaagttctagccaaaca |
211 |
Q |
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| ||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||| || ||||||||||||||||||||| |||||||||| || |
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| T |
3791211 |
ctaagcaaatggttatattgcctcattttcttgctataccatatccagttcaaggacatgtgaatccccttatgcaattctcacaaattctagccaacca |
3791112 |
T |
|
| Q |
212 |
tggttgcaaggtcacttttctacataccgagtttaaccataaacgatcgaaaaccggtgttttcgagcaagacaagatacaagtggtgacactcccagat |
311 |
Q |
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||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
3791111 |
tggttgcaaagtcacttttctacatactgagtttaaccatgaacgatcgaaaaccggtgtttccgagcaagacaagatacaagtggtgacacttccagat |
3791012 |
T |
|
| Q |
312 |
ggtttggaacctgaagatgatagaagtgatataaagaaagttattttatctattaaaagcaccatgccttctaaacttccaaagcttatagaagaagtta |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||| ||||||||| |||||||||||||||| |
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| T |
3791011 |
ggtttggaacctgaagatgatagaagtgatataaagaaagttcttttatcaattaaaagcaccatgcctcctagacttccaaaacttatagaagaagtta |
3790912 |
T |
|
| Q |
412 |
atgctttgaatgttcacaacaagatcaattgtatt |
446 |
Q |
| |
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|||||||||||||| |||||||||||||||||||| |
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| T |
3790911 |
atgctttgaatgttgacaacaagatcaattgtatt |
3790877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 300 - 419
Target Start/End: Complemental strand, 3770913 - 3770794
Alignment:
| Q |
300 |
acactcccagatggtttggaacctgaagatgatagaagtgatataaagaaagttattttatctattaaaagcaccatgccttctaaacttccaaagctta |
399 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| | || || || ||||| | ||||||| || ||||| ||||||| |
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| T |
3770913 |
acactcccagatggtttggaacctgaagatgatagaagtgatcaaaagaaagttctcttctcaatcaaaagaaacatgcctcctttgcttcctaagctta |
3770814 |
T |
|
| Q |
400 |
tagaagaagttaatgctttg |
419 |
Q |
| |
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|||||||||||||||||||| |
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| T |
3770813 |
tagaagaagttaatgctttg |
3770794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 135 - 229
Target Start/End: Complemental strand, 3759063 - 3758969
Alignment:
| Q |
135 |
cattttcttgttataccatttccagttcaaggacatgttaacccccttatgcaattctcacaagttctagccaaacatggttgcaaggtcacttt |
229 |
Q |
| |
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|||||||||| |||||||| ||| ||| ||||||| | || ||||||||||||||||| || ||| ||||||||||||| ||||| ||||||| |
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| T |
3759063 |
cattttcttgcaataccattcccaattctaggacatatgaatccccttatgcaattctctcatgttttagccaaacatggatgcaaaatcacttt |
3758969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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