View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1940_low_4 (Length: 444)
Name: NF1940_low_4
Description: NF1940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1940_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 16 - 426
Target Start/End: Original strand, 26357147 - 26357557
Alignment:
| Q |
16 |
atggtatgtgattgtgataatgagaatcatagcttggaaaacatataaatccaggctcaatttgcccttaatttggtttttccagtgccatgtgattaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26357147 |
atggtatgtgattgtgataatgagaatcatagcttggaaaacatataaatccaggctcaatttgcccttaatttggtttttccagtgccatgtgattaaa |
26357246 |
T |
|
| Q |
116 |
agttataactattaacaagttcagtcttcattgcccaacattactcatttacaataccaattttcattaaccttaacaggttcaagaaacatattttgat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26357247 |
agttataactattaacaagttcagtcttcattgcccaacattactcatttacaataccaatcttcattaaccttaacaggttcaagaaacatattttgat |
26357346 |
T |
|
| Q |
216 |
tattttccatgaatagaaaacttggaacaagagcaccatgggccggcagaattttaacacacaataaatggatattctgtgttaatattttgcggcctaa |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26357347 |
tattttccatgaatagaaaacttggaacaagagcaccatgggccgacagaattttaacacacaagaaatggatattctgtgttaatattttgcggcctaa |
26357446 |
T |
|
| Q |
316 |
accttttgagaatattttgatgaaacaatataagccacaataataacaagttcaagtagatgcaaaattaggaatttggacaaagaaaaaagacagaaaa |
415 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26357447 |
accttttgagaatattttgatgaaacactataagccacaataataacaagttcaagtagatgcaaaattaggaatttggacaaggaaaaaagacagaaaa |
26357546 |
T |
|
| Q |
416 |
atggcttgtgt |
426 |
Q |
| |
|
||||||||||| |
|
|
| T |
26357547 |
atggcttgtgt |
26357557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University