View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19410_low_1 (Length: 439)
Name: NF19410_low_1
Description: NF19410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19410_low_1 |
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| [»] scaffold0100 (1 HSPs) |
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Alignment Details
Target: scaffold0100 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 17 - 426
Target Start/End: Complemental strand, 49943 - 49534
Alignment:
| Q |
17 |
attattacatgaaatcatgattcaaatacttggatgtacacgtttggttttgtgaattgtgattattccaaacaatactctaatttaatttactttggat |
116 |
Q |
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| T |
49943 |
attattacatgaaatcatgattcaaatacttggatgtacacgtttggttttgtgaattgtgattattccaaacaatactctaatttaatttactatggat |
49844 |
T |
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| Q |
117 |
tttaatatgattgaataaaactataagactaagacatgaaagttgtcacgtttaattaaatttcataggtataaaaatgttgtaataatgtttatgaatg |
216 |
Q |
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| T |
49843 |
tttaatatgattgaataaaactataagactaagacatgagagttgtcacgtttaattaaattccataggtataaaaatgttgtaataatgtttatgaatg |
49744 |
T |
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| Q |
217 |
aattatgtgcaggttacttaggagggatgttgtgaaaagaacaggctcaggagggcgccatgatccctttgtttattcggtatatatcaatctttattta |
316 |
Q |
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| T |
49743 |
aattatgtgcaggttacttaggagggatgttgtgaaaagaacaggctcaggagggcgccatgatccctttgtttattcggtatatatcaatctttattta |
49644 |
T |
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| Q |
317 |
ttattcattaattactttttcagtttgaattttatatagtttaataaattcagtatttaatcgtgtaaacatagtgaattatataataagttgttacttt |
416 |
Q |
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| T |
49643 |
ttgttcattaattactttttcagtttgaattttatatagtttaataaattcagtatttaatcgtgtaaacatagtgaattatataataagttgttacttt |
49544 |
T |
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| Q |
417 |
atatactact |
426 |
Q |
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| T |
49543 |
atatactact |
49534 |
T |
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