View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19411_low_11 (Length: 215)
Name: NF19411_low_11
Description: NF19411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19411_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 28783273 - 28783472
Alignment:
| Q |
1 |
cggaaccggtggtggttgtggctttggaactggaggaggtttgtatactggagcaggtggtagaactggatgttcaacctttggtggtggacatggtttc |
100 |
Q |
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| T |
28783273 |
cggaaccggtggtggttgtggctttggaactggaggaggtttgtatactggagcaggtggtagaactggatgttcaacctttggtggtggacatggtttc |
28783372 |
T |
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| Q |
101 |
ttgactggaacaggaggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtttctcat |
200 |
Q |
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| T |
28783373 |
ttgactggaacaggaggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtttctcat |
28783472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 28783175 - 28783278
Alignment:
| Q |
8 |
ggtggtggttgtggctttggaactggaggaggtttgtatactggagcaggtggtagaactggatgttcaacctttggtggtggacatggtttcttgactg |
107 |
Q |
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| T |
28783175 |
ggtggtggaagtgcctttggaaccggtggaggtttgtatactggaacaggtggtaaaactggatgttcaacctttggtggtggacatggtttcttgaccg |
28783274 |
T |
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| Q |
108 |
gaac |
111 |
Q |
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|||| |
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| T |
28783275 |
gaac |
28783278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 28783448 - 28783536
Alignment:
| Q |
110 |
acaggaggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtttctc |
198 |
Q |
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| T |
28783448 |
acaggtggaggaagaggtttctcatacacaggtgtaggtggagggagaggtttatggtaaacaggcacaggcggaggaagaggtttctc |
28783536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 28783553 - 28783634
Alignment:
| Q |
116 |
ggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtttct |
197 |
Q |
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| T |
28783553 |
ggaggaagaggtttctcataaacaggtgtaggaggagggataggtttttcatagataggcacaggtggaggacaaggtttct |
28783634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 28783421 - 28783500
Alignment:
| Q |
116 |
ggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggttt |
195 |
Q |
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| T |
28783421 |
ggagggagaggtttatgataaacaggcacaggtggaggaagaggtttctcatacacaggtgtaggtggagggagaggttt |
28783500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 28783487 - 28783571
Alignment:
| Q |
116 |
ggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtttctcat |
200 |
Q |
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| T |
28783487 |
ggagggagaggtttatggtaaacaggcacaggcggaggaagaggtttctcgtagacaggtgtaggtggaggaagaggtttctcat |
28783571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 28783514 - 28783578
Alignment:
| Q |
110 |
acaggaggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacagg |
174 |
Q |
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| T |
28783514 |
acaggcggaggaagaggtttctcgtagacaggtgtaggtggaggaagaggtttctcataaacagg |
28783578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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