View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19411_low_12 (Length: 201)

Name: NF19411_low_12
Description: NF19411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19411_low_12
NF19411_low_12
[»] chr4 (8 HSPs)
chr4 (21-186)||(28783307-28783472)
chr4 (13-97)||(28783194-28783278)
chr4 (96-184)||(28783448-28783536)
chr4 (102-183)||(28783553-28783634)
chr4 (102-181)||(28783421-28783500)
chr4 (20-90)||(28783099-28783166)
chr4 (102-186)||(28783487-28783571)
chr4 (96-160)||(28783514-28783578)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 28783307 - 28783472
Alignment:
Q  21 ggaggtttgtatactggaacaggtggtaaaactggatgttcaacctttggtggtggacatggtttcttgactggaacaggaggaggaagaggtttatgat 120  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28783307 ggaggtttgtatactggagcaggtggtagaactggatgttcaacctttggtggtggacatggtttcttgactggaacaggaggaggaagaggtttatgat 28783406  T
Q  121 atacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtttctcat 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28783407 atacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtttctcat 28783472  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 28783194 - 28783278
Alignment:
Q  13 gaacctgtggaggtttgtatactggaacaggtggtaaaactggatgttcaacctttggtggtggacatggtttcttgactggaac 97  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28783194 gaaccggtggaggtttgtatactggaacaggtggtaaaactggatgttcaacctttggtggtggacatggtttcttgaccggaac 28783278  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 96 - 184
Target Start/End: Original strand, 28783448 - 28783536
Alignment:
Q  96 acaggaggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtttctc 184  Q
    ||||| |||||||||||||| | ||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  28783448 acaggtggaggaagaggtttctcatacacaggtgtaggtggagggagaggtttatggtaaacaggcacaggcggaggaagaggtttctc 28783536  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 28783553 - 28783634
Alignment:
Q  102 ggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtttct 183  Q
    |||||||||||||| | ||| ||||| ||||| ||||||| |||||| | ||| | ||||||||||||||||  ||||||||    
T  28783553 ggaggaagaggtttctcataaacaggtgtaggaggagggataggtttttcatagataggcacaggtggaggacaaggtttct 28783634  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 28783421 - 28783500
Alignment:
Q  102 ggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggttt 181  Q
    ||||| |||||||||||||| ||||||  ||||||||| |||||||| | ||| |||||   ||||||||| ||||||||    
T  28783421 ggagggagaggtttatgataaacaggcacaggtggaggaagaggtttctcatacacaggtgtaggtggagggagaggttt 28783500  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 28783099 - 28783166
Alignment:
Q  20 tggaggtttgtatactggaacaggtggtaaaactggatgttcaacctttggtggtggacatggtttcttga 90  Q
    |||||| || |||| |||||||||||||| |||||| || |||| |||   ||||||||||||||||||||    
T  28783099 tggaggcttatatattggaacaggtggtagaactgggtgctcaatctt---tggtggacatggtttcttga 28783166  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 28783487 - 28783571
Alignment:
Q  102 ggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtttctcat 186  Q
    ||||| ||||||||||| || ||||||  ||| ||||| |||||||| |  || |||||   |||||||||||||||||||||||    
T  28783487 ggagggagaggtttatggtaaacaggcacaggcggaggaagaggtttctcgtagacaggtgtaggtggaggaagaggtttctcat 28783571  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 28783514 - 28783578
Alignment:
Q  96 acaggaggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacagg 160  Q
    ||||| |||||||||||||| |  || ||||| ||||||||||| |||||||| | |||||||||    
T  28783514 acaggcggaggaagaggtttctcgtagacaggtgtaggtggaggaagaggtttctcataaacagg 28783578  T

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