View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19411_low_2 (Length: 396)
Name: NF19411_low_2
Description: NF19411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19411_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 7 - 394
Target Start/End: Complemental strand, 26481684 - 26481303
Alignment:
| Q |
7 |
agaaacagaaaaaagaaagtgggttgtcgtacttacgagatgaatcaaggagaagcattgtagatttaggggtatcaacaatcatgatatgattgtaatc |
106 |
Q |
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| T |
26481684 |
agaaacagaaaaaataaagtgggttgtcgtacttacgagatgaatcaaggagaagcattgtagatttaggggtatcaacaatcatgatatgattgtaatc |
26481585 |
T |
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| Q |
107 |
agttttaacagatgttagaatttgaaagctttcttcgtcttcttcttgatgatgatgtggttgttgttgttgttgagcatgaagtgaagttggagagaat |
206 |
Q |
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| T |
26481584 |
agttttaacagatgttagaatttgaaagctttcttcgtcttcttcttgatgatgatgtggttgttgttgttgttgagcatgaagtgaagttggagagaat |
26481485 |
T |
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| Q |
207 |
ggatgattatggatagaggagagtattgattttgatgttggggtgtgaatagtgaaagaatgagaatgagaatgagaaacaccaatggcaatatgtggaa |
306 |
Q |
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| T |
26481484 |
ggatgattatggatagaggagagtattgattttgatgttggggtgtgaatagtgaaagaatgagaatg------agaaacaccaatggcaatatgtggaa |
26481391 |
T |
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| Q |
307 |
aactaaatggcaatacgcagcaccctctcattgttgcttcaaacggataataacttcaacctcaattctctatcttcaccctttgctt |
394 |
Q |
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| T |
26481390 |
aactaaatggcaatacgcagcaccctctcattgttgcttcaaacggataataacttcaacctcaattctctatcttcacccattgctt |
26481303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 44747834 - 44747872
Alignment:
| Q |
170 |
ttgttgttgttgagcatgaagtgaagttggagagaatgg |
208 |
Q |
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| T |
44747834 |
ttgttgttgttgggcatgaagtgaagttggagagaatgg |
44747872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 35192772 - 35192810
Alignment:
| Q |
170 |
ttgttgttgttgagcatgaagtgaagttggagagaatgg |
208 |
Q |
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| T |
35192772 |
ttgttgttgttgggcatgaagtgaagttggagagaatgg |
35192810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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