View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19411_low_6 (Length: 272)
Name: NF19411_low_6
Description: NF19411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19411_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 33822691 - 33822821
Alignment:
| Q |
11 |
taatactattttcgaataacacaaagagaaactataaaagaaggaaaatgcaagttaataaattcatgataaaatcacgtgtaatgaactattagtggtg |
110 |
Q |
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| T |
33822691 |
taatactattttcgaataacacaaaaagaaaatacaaaagaaggaaaatgcaagttaatgaattcacgataaaatcacgtgtaatgaactgttagtggtg |
33822790 |
T |
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| Q |
111 |
gtcgtgaaagcgcaaagataatcacaaacaa |
141 |
Q |
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| T |
33822791 |
gtcgtgaaagcgcaaagaaaatcacaaacaa |
33822821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 33822847 - 33822950
Alignment:
| Q |
138 |
acaatgaggaaactaaaactgcatacaaaacctcaccttcctttcctattttaaggatttgagttaaaaattagtgcagttaaatccataaatctaagtg |
237 |
Q |
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| T |
33822847 |
acaatgaggaa-ctaaaactgcatacaaaacctcaccttcctttcctattttaaggatttgagttaaaaattagtgcagttaaatccataaatctaagtg |
33822945 |
T |
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| Q |
238 |
tttaa |
242 |
Q |
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||||| |
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| T |
33822946 |
tttaa |
33822950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 11197520 - 11197573
Alignment:
| Q |
192 |
ggatttgagttaaaaattagtgcagttaaatccataaatctaagtgtttaagac |
245 |
Q |
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| T |
11197520 |
ggattcgagttaaaaattattgcagttaaatctataaacttaagtgtttaagac |
11197573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 16938104 - 16938160
Alignment:
| Q |
187 |
tttaaggatttgagttaaaaattagtgcagttaaatccataaatctaagtgtttaag |
243 |
Q |
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|||||||||| |||||| |||||||||| ||||||| | |||| |||||||||||| |
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| T |
16938104 |
tttaaggattaaagttaagaattagtgcaattaaatctagaaatttaagtgtttaag |
16938160 |
T |
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