View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19412_high_2 (Length: 553)
Name: NF19412_high_2
Description: NF19412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19412_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 6 - 367
Target Start/End: Original strand, 33488439 - 33488795
Alignment:
| Q |
6 |
agtgagatgaaataatcttggtcagaaaattaagaaaaataattaaatcatgtaaagtaatgtgactgtttagtccctctgttaaatggtccgtttatac |
105 |
Q |
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| T |
33488439 |
agtgagatgaaataatcttggtcagaaaattaagaaaaataattaaatcatgtaaagtaatgtgactgtttagtccctctgttaaatggtccgtttatac |
33488538 |
T |
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| Q |
106 |
tccataaactatgaaatggagtataaactcggtttgtttgtaaggctcattccacaccttcattatagcttcaacttctttatattcgtcccttcaatca |
205 |
Q |
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| T |
33488539 |
tctataaactatgaaatggagtataaactcggtttgtttgtaaggttcattccacaccttcattatagcttcaacttctt--tattcgtccctccaatca |
33488636 |
T |
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| Q |
206 |
ccaagccatggtattaaatctacgtgcaagattaccttgtatgagatgagatcattttagtcacaacatcatcaactgaaaaataatcaaaatatacaag |
305 |
Q |
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| T |
33488637 |
ccaagccatggtattaaatctacgtgcaagattaccttgtatgagatgagatcattttggtcacaa---catcaaatgaaaaataatcaaaatatacaag |
33488733 |
T |
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| Q |
306 |
agactgcttaagtcaatattatataagtattttgtttgttttgataaaatatttgttaagaa |
367 |
Q |
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| T |
33488734 |
agactgcttaagtcaatattatataagtattttgtttgttttgataaaatatttgttaagaa |
33488795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 456 - 503
Target Start/End: Original strand, 33488821 - 33488868
Alignment:
| Q |
456 |
ttgccacatgagattgttacaccatcatatagaagaaattcagctgtt |
503 |
Q |
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| T |
33488821 |
ttgccacatgagattgttacaccatcatatagaagaaattcagctgtt |
33488868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 455 - 503
Target Start/End: Complemental strand, 1611134 - 1611086
Alignment:
| Q |
455 |
tttgccacatgagattgttacaccatcatatagaagaaattcagctgtt |
503 |
Q |
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| T |
1611134 |
tttgacacctgagattgttacaccatccttgagaagaaattcagctgtt |
1611086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 456
Target Start/End: Complemental strand, 1611179 - 1611151
Alignment:
| Q |
428 |
ttatcatagaagagagatgatgaatgatt |
456 |
Q |
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| T |
1611179 |
ttatcatagaagagagatgatgaatgatt |
1611151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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