View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19412_low_4 (Length: 408)
Name: NF19412_low_4
Description: NF19412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19412_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 14 - 389
Target Start/End: Original strand, 3247269 - 3247644
Alignment:
| Q |
14 |
ttctcatcaagagagctgaacttctgcattttaacttccgaaaacacacgtgcactaagttcactgataatagcattgctggttgttttctattacttaa |
113 |
Q |
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| T |
3247269 |
ttctcatcaagagagctgaacttctgcattttaacttccgaaaacacacgtgcactaagttcactgataatagcattgctggttgttttctattacttaa |
3247368 |
T |
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| Q |
114 |
tctcctcaaagagtattttggcttcaaggcctctttacattgtcttggtaactgatgtcacgattgtcattgctcgcatttacagcgaaaaggctcgagt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3247369 |
tctcctcaaagagtattttggcttcaaggcctctttacattgtcttggtaaccgatgtcacgattgtcattgctcgcatatacagcgaaaaggctcgagt |
3247468 |
T |
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| Q |
214 |
tttggaagaaaataaaggagaaatggttgaagctgctgaagatggacgcagttggaatgatgcagtgaaacttttggagagaggtttggttgtataccaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3247469 |
tttggaagaaaataaaggagaaatggttgaagctgctgaagatggacgcagttggaatgatgcagtgaaacttttggagagaggtttggttgtataccaa |
3247568 |
T |
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| Q |
314 |
gcaattagaggtgtttttattgattgtagtatctatttagttgttgttgtatgctgcatttccataatgtaacttt |
389 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3247569 |
gcaattaaaggtgtttttattgattgtagtatttatttagttgttgttgtatgctgcatttccatcatgtaacttt |
3247644 |
T |
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