View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19412_low_6 (Length: 289)
Name: NF19412_low_6
Description: NF19412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19412_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 271
Target Start/End: Complemental strand, 51210908 - 51210653
Alignment:
| Q |
16 |
tatagtcattaaaggcatagagattccattcccaacgccacttatagtcccaacaaacatcaacaaataatcccatgagtctgcaaatgtgaaaagcttg |
115 |
Q |
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| T |
51210908 |
tatagtcattaaaggcatagagattccattcccaacgccacttatagtcccaacaaacatcaacaaataatcccatgagtctgcaaatgtgaaaagcttg |
51210809 |
T |
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| Q |
116 |
taaaagggtactgtcttattgctttgatccttcaccttgttattcttggaatcatgttgcatgtcagccatttcttgaacattttcagcacctgcaggaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51210808 |
taaaagggtactgtcttattgctttgatccttcaccttgttattcttggaatcatgttgcatgtcagccatttcttgaacattttcagcacctgcaggaa |
51210709 |
T |
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| Q |
216 |
ctggtggatgatgacttgttgaccctgtcatctcagttgaagcaatatctccatcc |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51210708 |
ctggtggatgatgacttgttgaccctgtcatctcagttgaagcaatatctccatcc |
51210653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 51197331 - 51197221
Alignment:
| Q |
19 |
agtcattaaaggcatagagattccattcccaacgccacttatagtcccaacaaacatcaacaaataatcccatgagtctgcaaatgtgaaaagcttgtaa |
118 |
Q |
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|||||| || ||||| |||||||||||||||| ||| | |||||||||||||||||| |||| |||| | || || ||||||| |||||||||||| |
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| T |
51197331 |
agtcatcaagggcattgagattccattcccaatagcaccaacagtcccaacaaacatcaataaatgatccaaagaatcagcaaatgagaaaagcttgtat |
51197232 |
T |
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| Q |
119 |
aagggtactgt |
129 |
Q |
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| T |
51197231 |
aagggtactgt |
51197221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 49739077 - 49739328
Alignment:
| Q |
16 |
tatagtcattaaaggcatagagattccattcccaacgccacttatagtcccaacaaacatcaacaaataatcccatgagtctgcaaatgtgaaaagcttg |
115 |
Q |
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|||||||| |||||||||||||| |||||||||||| ||| |||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||| |
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| T |
49739077 |
tatagtcagtaaaggcatagagactccattcccaacagcaccgatagtcccaacaaacatcaataaataatcccaagagtctgcaaatgagaaaagcttg |
49739176 |
T |
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| Q |
116 |
taaaagggtactgtcttattgctttgatccttcaccttgttattcttggaatcatgttgcatgtcagccatttcttgaacattttcagcacctgcaggaa |
215 |
Q |
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|||||||||||||| || ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||| |||||||| |||| | || |
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| T |
49739177 |
taaaagggtactgttttcttgctttgatccttcaccttgttcttcttggaatcttggcgcatgtcagccatttcttggccattttcatgacct---gaaa |
49739273 |
T |
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| Q |
216 |
ctggt---ggatgatgacttgttgaccctgtcatctcagttgaagcaatatctcc |
267 |
Q |
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||||| |||||||| |||||||||||||||||||||||| || ||||||||| |
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| T |
49739274 |
ctggtagatgatgatgatttgttgaccctgtcatctcagttgcagtaatatctcc |
49739328 |
T |
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