View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19413_high_10 (Length: 371)
Name: NF19413_high_10
Description: NF19413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19413_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 12775439 - 12775076
Alignment:
| Q |
1 |
gaaaaccaactcaatagaaaaagaaaagcatcttaggccttttcctccctatgggcaccaatattctaacaagccctaatccaaatgaactaaaccaaat |
100 |
Q |
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| T |
12775439 |
gaaaaccaactcaatagaaaaagaaaagcatcttaggccttttcctccctatgggcaccaaaattctaacaagccctaatccaaatgaactaaaccaaat |
12775340 |
T |
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| Q |
101 |
caaacaatcactccatagtcttaagaaattttttgcggttataatctaaatttggatgcactacaaagtttcacggttctgtaaaactgcaatttccacc |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
12775339 |
caaacaatcactccatagtcttaagaatttttttgcggttataatctaaatttggatgcactacaaagtttcacggttctgtgaaactgcaatttcgacc |
12775240 |
T |
|
| Q |
201 |
atatcaatcatgttttctgctagtatatataaatgtttgcagcgttattgcgaccacaatttaaaccatgctatcaa--------nnnnnnnnnnnnnag |
292 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| || |
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| T |
12775239 |
atatcgatcatgttttctgctagtatatataaatgtttgtagcgtcattgcgaccacaatttaaaccatgctatcaaatatatatatatatatatataag |
12775140 |
T |
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| Q |
293 |
attgcattaacaaaaatcgatagcgaaaaaactcgcagtagaaaaattggaactgatttattag |
356 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12775139 |
attgcattaacaaaaatcgatagcgaaaaaactcgcaatagaaaaattggaactgatttattag |
12775076 |
T |
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