View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19413_high_2 (Length: 728)
Name: NF19413_high_2
Description: NF19413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19413_high_2 |
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| [»] scaffold0376 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 689; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 689; E-Value: 0
Query Start/End: Original strand, 1 - 721
Target Start/End: Complemental strand, 4022325 - 4021605
Alignment:
| Q |
1 |
taggttgaaaatgaagctataggacaatgacttcagaggtaattggaagttgtaggttatctctagtttttctgtttaactgagaacttctataattaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4022325 |
taggttgaaaatgaagctataggacaatgacttcagaggtaattggaagttgtaggttatctctagtttttctgtttaactgagaacttctataattaat |
4022226 |
T |
|
| Q |
101 |
ttttctttgtaacacattaaagtgtaacttcatttaaataacaaaaataaaatttgttgaattcttcataagtacagtttttgaaggagacaccaacatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4022225 |
ttttctttgtaacacattaaagtgtaacttcatttaaataacaaaaataaaatttgttgaattcttcataagtacagtttttgaaggagacaccaacatg |
4022126 |
T |
|
| Q |
201 |
tggttggtttgcggtagggggaagcttcacttgctgccaaagagtttccttgaccaattgttagtattcatatatagcacttaaatctgacaatttaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4022125 |
tggttggtttgcggtagggggaagcttcacttgctgccaaagagtttccttgaccaattgttagtattcatatatagcacttaaatctgacaatttaaat |
4022026 |
T |
|
| Q |
301 |
ccttaacccaactcaaatactatgttaaatgaacttggatttttccttaaaatctcccgacaacctgtgtgagactccaatacaacttaaataatttggt |
400 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4022025 |
ccttaacccaactcaaatactatgttaaatgaacatggatttttccttaaaatctcccgacaacctgtgtgagactccaatacaacttaaataatttggt |
4021926 |
T |
|
| Q |
401 |
atatcatctgccaaattaaagagaacagggaactgatcgcataaaggttgatccccaagccatagatctctccaaaacaatgtgttttcacttttcacca |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4021925 |
atatcatctgccaaattaaagagaacagggaactgatcgcataaaggttgattcccaagccatagatctctccaaaacaatgtgttttcacttttcaccg |
4021826 |
T |
|
| Q |
501 |
tttccgactactcacataacttaatttgtaaaccagtttggttcgacttcacatgcctttccaatagaacataaatatcgccaccataacgagtctatcc |
600 |
Q |
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| T |
4021825 |
tttccaactactcacttaacttaatttgtaaaccagtttggttcgacttcacatgcctttccaatagaacataaatatcgccaccataacgagtctatcc |
4021726 |
T |
|
| Q |
601 |
ttcccgactacacggtatctggacggagcaattttcctgaaactggactgtacctatactttattaacccgaaccaaatagtaccattttccgcaatgca |
700 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4021725 |
ttcccgactacacggtatctggatggagcaattttcctgaaactggactgtacctatactttattaacctgaaccaaatagtaccattttccgcaatgca |
4021626 |
T |
|
| Q |
701 |
cctccataaccatattcttcg |
721 |
Q |
| |
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||||||||||||| ||||||| |
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| T |
4021625 |
cctccataaccattttcttcg |
4021605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 4006973 - 4006759
Alignment:
| Q |
1 |
taggttgaaaatgaagctataggacaatgacttcagaggtaattggaagttgtaggttatctctagtttttctgtttaactgagaacttctataattaat |
100 |
Q |
| |
|
|||||||||||||||||| |||||| | |||||||||||||||| ||||| |||||||||||| ||||| ||||||||||||||||||||| ||| | |
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| T |
4006973 |
taggttgaaaatgaagctgtaggaccagaacttcagaggtaattgaaagttataggttatctctggttttcttgtttaactgagaacttctatgattggt |
4006874 |
T |
|
| Q |
101 |
ttttctttgtaacacattaaagtgtaacttcatttaaataacaaaaataaaatttgttgaattcttcataagtacagtttttgaaggagacaccaacatg |
200 |
Q |
| |
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||| |||||||||||| ||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||| | ||||| |||||| ||| || || |
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| T |
4006873 |
ttta-tttgtaacacatgaaagtgtaagttcatttaattaacaaaaataaaatttattgaattcttcataagtagatttttttaaggaggcacaaatctg |
4006775 |
T |
|
| Q |
201 |
tggttggtttgcggta |
216 |
Q |
| |
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||||||||||| |||| |
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| T |
4006774 |
tggttggtttgtggta |
4006759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 162
Target Start/End: Complemental strand, 3807446 - 3807361
Alignment:
| Q |
85 |
aacttctataattaatttttctttgtaacacattaaag--------tgtaacttcatttaaataacaaaaataaaatttgttgaat |
162 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||| |||| ||||| |||||||||||||||||| ||| ||||||||||| |
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| T |
3807446 |
aacttctaaaattgatttttctttgtaacacataaaagattaaaagtgtaatttcatttaaataacaaaactaagatttgttgaat |
3807361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 162
Target Start/End: Complemental strand, 3814890 - 3814805
Alignment:
| Q |
85 |
aacttctataattaatttttctttgtaacacattaaag--------tgtaacttcatttaaataacaaaaataaaatttgttgaat |
162 |
Q |
| |
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|||||||| |||| ||||||||||||||||||| |||| ||||| |||||||||||||||||| ||| ||||||||||| |
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| T |
3814890 |
aacttctaaaattgatttttctttgtaacacataaaagattaaaagtgtaatttcatttaaataacaaaactaagatttgttgaat |
3814805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 160
Target Start/End: Original strand, 3958508 - 3958635
Alignment:
| Q |
37 |
aggtaattggaagttgtaggttatctctagtttttctgtttaactgagaacttctataatt----aatttttctttgtaacacattaaagtgtaacttca |
132 |
Q |
| |
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||||||| | |||||||||||||||| || ||| | ||||| |||||||| |||||||| |||||||||||||||||||| ||||| ||| || |
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| T |
3958508 |
aggtaatcgtaagttgtaggttatctttaactttcttctttaaatgagaactgctataattgattaatttttctttgtaacacatgaaagtctaagttat |
3958607 |
T |
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| Q |
133 |
tttaaataacaaaaataaaatttgttga |
160 |
Q |
| |
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||| |||||||||| | ||||||||| |
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| T |
3958608 |
gctaagtaacaaaaattagatttgttga |
3958635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 530 - 607
Target Start/End: Complemental strand, 5190 - 5113
Alignment:
| Q |
530 |
aaaccagtttggttcgacttcacatgcctttccaatagaacataaatatcgccaccataacgagtctatccttcccga |
607 |
Q |
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||||||||||||||| |||||||| ||||||| || |||||||||| ||||||||||||||||||| ||||||||| |
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| T |
5190 |
aaaccagtttggttccacttcacacacctttcctattgaacataaatcacgccaccataacgagtctaaccttcccga |
5113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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