View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19413_high_21 (Length: 237)

Name: NF19413_high_21
Description: NF19413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19413_high_21
NF19413_high_21
[»] chr1 (2 HSPs)
chr1 (1-131)||(42730912-42731042)
chr1 (127-221)||(42730791-42730885)
[»] chr4 (1 HSPs)
chr4 (135-221)||(21716321-21716407)
[»] chr2 (1 HSPs)
chr2 (135-221)||(40352030-40352116)


Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 42731042 - 42730912
Alignment:
Q  1 ttgatgcactgaattcaacagtacaatacatgattgtctaactttttacatagaaaagaaatagtcaaaagttgaagatgtaatttaactattagtcaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42731042 ttgatgcactgaattcaacagtacaatacatgattgtctaactttttacatagaaaagaaatagtcaaaagttgaagatgtaatttaactattagtcaga 42730943  T
Q  101 attgacttagaatcaatgaaagatgcaatat 131  Q
    ||||||| |||||||||||||||||||||||    
T  42730942 attgactcagaatcaatgaaagatgcaatat 42730912  T

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Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 127 - 221
Target Start/End: Complemental strand, 42730885 - 42730791
Alignment:
Q  127 aatattattacctgaagaaggcgccaaggagaatcaggccaacgaattggatcttgaacatgaacagaagaaatagttcccataaaccaactaat 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42730885 aatattattacctgaagaaggcgccaaggagaatcaggccaacgaattggatcttgaacatgaacagaagaaatagttcccataaaccaactaat 42730791  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 135 - 221
Target Start/End: Complemental strand, 21716407 - 21716321
Alignment:
Q  135 tacctgaagaaggcgccaaggagaatcaggccaacgaattggatcttgaacatgaacagaagaaatagttcccataaaccaactaat 221  Q
    |||||||||||||||||||||||| | |||||||||||| |||||   ||| ||||||||||  || ||||||||||||||||||||    
T  21716407 tacctgaagaaggcgccaaggagagttaggccaacgaataggatcaacaacctgaacagaagcgattgttcccataaaccaactaat 21716321  T

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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 40352030 - 40352116
Alignment:
Q  135 tacctgaagaaggcgccaaggagaatcaggccaacgaattggatcttgaacatgaacagaagaaatagttcccataaaccaactaat 221  Q
    |||||||||||| | |||||| |||| |||||||||||| |||||   ||| ||||||||||||||||||||||| |||||||||||    
T  40352030 tacctgaagaagtctccaaggggaattaggccaacgaataggatcaacaacttgaacagaagaaatagttcccatgaaccaactaat 40352116  T

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