View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19413_high_3 (Length: 612)
Name: NF19413_high_3
Description: NF19413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19413_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 12 - 385
Target Start/End: Complemental strand, 35791563 - 35791195
Alignment:
| Q |
12 |
gaagaatatcaagggcttacatttgcaacatttagaggagcaggtcacgcagttccctgtttcaaaccaagcaactcacttgcgtttttcacctcctttc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35791563 |
gaagaatatcaagggcttacatttgcaacatttagaggagcaggtcacgcagttccctgtttcaaaccaagcaactcacttgcgtttttcacctcctttc |
35791464 |
T |
|
| Q |
112 |
tacatggagaaacacctccttctacaaaataataataactcgaataactaatcatattgggtacatgttatgtgaccccgtatgaaaattttgctattac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35791463 |
tacatggagaaacacctccttctacaaaataataataattcgaataactaatcatattgggtacatgttatgtgaccccgtatgaaaattttgctattac |
35791364 |
T |
|
| Q |
212 |
atagcaatagctaatagtctaatcatgtctaatatgacaagtatttcaagataacgaataaagagt-ttttgctcacggcctaccaaagcgttatgttat |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35791363 |
atagcaatagctaatagtctaatcatgtctaatatgacaagtattccaagataacgaataaagagttttttgctcacggcctaccaaagcgttatgttat |
35791264 |
T |
|
| Q |
311 |
tttactcttgagatcctatgcattgtcaatgcaatatactactactaatatcttcttattaatgtaggttcaata |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
35791263 |
tttactcttgagatcctatgcattgtcaatgcaatatactactaata------tcttattaatgtaggttcaata |
35791195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 124 - 274
Target Start/End: Complemental strand, 35782191 - 35782045
Alignment:
| Q |
124 |
cacctccttctacaaaataataataactcgaataactaatcatattgggtacatgttatgtgaccccgtatgaaaattttgctattacatagcaatagct |
223 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
35782191 |
cacctccttctacaaaataataat---tcgaataactaatcatattgagtacatgttatgtgaccccatatgaaaattttgctattacatagcaataact |
35782095 |
T |
|
| Q |
224 |
aatagtctaatcatgtctaatatgacaagtatttcaagataacgaataaag |
274 |
Q |
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|||||||| |||||||| |||||| |||||||| ||||||||||||||||| |
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| T |
35782094 |
aatagtctgatcatgtc-aatatggcaagtattacaagataacgaataaag |
35782045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 306 - 594
Target Start/End: Complemental strand, 35781013 - 35780712
Alignment:
| Q |
306 |
gttattttactcttgagatcctatgcattgtcaatgcaatatactactactaatatcttcttattaatgtaggttcaatatgtcatttcacataaa---- |
401 |
Q |
| |
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|||||||||||||| | ||||||| |||||| |||||||||||||| || || |||||||||||||||||||||||||||||||||||||| |
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| T |
35781013 |
gttattttactcttcatatcctatccattgtgaatgcaatatactagtaata------tcttattaatgtaggttcaatatgtcatttcacataaacttg |
35780920 |
T |
|
| Q |
402 |
-----attggcaaaaataaggaaaagatatcaataatgcttaagaagacaatgtgaatctataatatactataccaaaattgagtaatggaatgtnnnnn |
496 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35780919 |
caaaaattggcaaaaataagaaaaagatatcaataatgtttaagaagacaatgtg-------aatatactataccaaaattgagtaatggaatgt-caaa |
35780828 |
T |
|
| Q |
497 |
nnnnnttatacataaagagtaacacaatttaaggtagggaatacacatct------------------aaacctgctggaataaaatacaaacaaacgtg |
578 |
Q |
| |
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|||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
35780827 |
aaaaattatacttaaagagcaacacaatttaaggtagggaatacacatctaacacatgacggccttcaaaacctgctggaataaaatagaaacaaacgtg |
35780728 |
T |
|
| Q |
579 |
tccatgaacacgtatt |
594 |
Q |
| |
|
|||||||||||||||| |
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| T |
35780727 |
tccatgaacacgtatt |
35780712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 509 - 594
Target Start/End: Complemental strand, 35791193 - 35791108
Alignment:
| Q |
509 |
taaagagtaacacaatttaaggtagggaatacacatctaaacctgctggaataaaatacaaacaaacgtgtccatgaacacgtatt |
594 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35791193 |
taaagagtaacacaatttaaggtagggaatacacatctaaacctgctggaataaaatacaaacaaacgtgtccatgaacacatatt |
35791108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 35782280 - 35782183
Alignment:
| Q |
12 |
gaagaatatcaagggcttacatttgcaacatttagaggagcaggtcacgcagttccctgtttcaaaccaagcaactcacttgcgtttttcacctcctt |
109 |
Q |
| |
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|||||||| ||| ||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35782280 |
gaagaataccaaaggcttacgtttgcaacatttagaggagcaggtcatgcagttccatgtttcaaaccaagcaactcacttgtgtttttcacctcctt |
35782183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 124 - 225
Target Start/End: Complemental strand, 35785071 - 35784976
Alignment:
| Q |
124 |
cacctccttctacaaaataataataactcgaataactaatcatattgggtacatgttatgtgaccccgtatgaaaattttgctattacatagcaatagct |
223 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||| ||||||| ||||||||| ||||| | ||||||||||| ||||||||||| |||||||| |
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| T |
35785071 |
cacctccttctacaaaataat------tcgaataattaattatattggatacatgttacgtgactcgatatgaaaatttagctattacataccaatagct |
35784978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 3334970 - 3335090
Alignment:
| Q |
13 |
aagaatatcaagggcttacatttgcaacatttagaggagcaggtcacgcagttccctgtttcaaaccaagcaactcacttgcgtttttcacctcctttct |
112 |
Q |
| |
|
|||||||| |||| ||||| ||||| |||||||||||||| ||||| ||||| |||||||| ||||||||||| |||||| || |||||| ||||||| |
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| T |
3334970 |
aagaatatgaaggacttacgtttgctacatttagaggagctggtcatgcagtgccctgttttaaaccaagcaattcacttaaattcttcaccacctttct |
3335069 |
T |
|
| Q |
113 |
acatggagaaacacctccttc |
133 |
Q |
| |
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| ||||||| |||| ||||| |
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| T |
3335070 |
tcttggagaatcaccaccttc |
3335090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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