View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19413_high_5 (Length: 533)
Name: NF19413_high_5
Description: NF19413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19413_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 13 - 516
Target Start/End: Complemental strand, 40505607 - 40505103
Alignment:
| Q |
13 |
attattctcatagttcttttgttgtacacccttcaagcaccaatcaacaagtaatttaactatagaatttggaagtgtgaaagtatttgtctcacacaaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
40505607 |
attattctcatagttcttttgttgtacacccttcaagcaccaatcaacaagtaatttaactatagaatttggaagtgtcaaagtatttgtctcatacaaa |
40505508 |
T |
|
| Q |
113 |
atgcatattattgtaattgatggcttctcctgtttctattcctgttctattgcttcttccacttgagtccttgaaacaatttctgtcctcggact-gtta |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
40505507 |
atgcatattattgtaattgatggcttctcctgtttctattcctgttctattgcttcttccacttgagtccttgacacaatttctgtcctcggacttgtta |
40505408 |
T |
|
| Q |
212 |
ttctcttttcatacattatgctaataattagtgtttgtttacatagaccgttagatcgataaaatcacggtggttcaccactccaatgtgcaacttttgc |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
40505407 |
ttctcttttcatacattatgctaataattagtgtttgtttacatagaccattagatcgataaaatcacggtagttcaccactccaatgtgcaacttttgc |
40505308 |
T |
|
| Q |
312 |
taaaattacgttgactcgccatggttctgccaatctcaccgtcaatccaaacatgtactcggtggttctcaacttgctataaaacggccttggtgattgc |
411 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
40505307 |
taaaattacgttgactcaccatggttctgtcaatctcaccgtcaatccaaacatgtacttggtggttctcaacttgctataaaaaggccttggtgattgc |
40505208 |
T |
|
| Q |
412 |
tatcatgtaacttgttgaaggttaatcaattttcttttctggggcccaacattttagcttagtttacaacctgagaggaatttctcagtttgtctcaaac |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40505207 |
tatcatgtaacttgttgaaggttaatcaattttcttttctggggcccaacattttagcttagtttacaagctgagaggaatttctcagtttgtctcaaac |
40505108 |
T |
|
| Q |
512 |
tttct |
516 |
Q |
| |
|
||||| |
|
|
| T |
40505107 |
tttct |
40505103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 13 - 257
Target Start/End: Complemental strand, 22138098 - 22137854
Alignment:
| Q |
13 |
attattctcatagttcttttgttgtacacccttcaagcaccaatcaacaagtaatttaactatagaatttggaagtgtgaaagtatttgtctcacacaaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
22138098 |
attattctcatagttcttttgttgtacacccttcaagcaccaatcaacaagtaatttaactatagaatttggaagtgtcaaagtatttgtctcatacaaa |
22137999 |
T |
|
| Q |
113 |
atgcatattattgtaattgatggcttctcctgtttctattcctgttctattgcttcttccacttgagtccttgaaacaatttctgtcctcggac-tgtta |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
22137998 |
atgcatattattgtaattgatggcttctcctgtttctattcctgttctattgcttcttccacttgagtccttgacacaatttctgtcctcggacttgtta |
22137899 |
T |
|
| Q |
212 |
ttctcttttcatacattatgctaataattagtgtttgtttacatag |
257 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22137898 |
ttctcttttcataca-tatgctaataattagtgtttgtttacatag |
22137854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University