View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19413_high_7 (Length: 430)
Name: NF19413_high_7
Description: NF19413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19413_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 4827400 - 4827719
Alignment:
| Q |
1 |
cataacattatcggtgtcaacacaaaatgaattcattatcccagtcattgaagaaacaagcatggccaaaatattttcctaaaaaccaatccaagaggtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4827400 |
cataacattatcggtgtcaacacaaaatgaattcattatcccagtcattgaagaaacaagcatgaccaaaatattttcctaaaaaccaatccaagaggtg |
4827499 |
T |
|
| Q |
101 |
aagaatttaaccattttcaccaattggagtaccaacgtcttctattccaaaaagatgagagcattccagaatctccacaagaaccacacaacaaggaatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4827500 |
aagaatttaaccattttcaccaattggagtaccaacgtcttctattccaaaaagatgagagcattccagaatctccacaagaaccacacaacaagaaatt |
4827599 |
T |
|
| Q |
201 |
acatctaaccacactctgtcttcattgctaagagcatgattagctaaaaggttggctgattccagcatgatggaaactaatacagccatgataatttctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||| |
|
|
| T |
4827600 |
acatctaaccacactctgtcttcattgctaagagcatgattagctaaaaggttggctgattccagcatgacggaaactaatacaaccatgagaatttctt |
4827699 |
T |
|
| Q |
301 |
ttcccaccactaaacaaaag |
320 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4827700 |
ttcccaccactaaacaaaag |
4827719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 416
Target Start/End: Original strand, 4827776 - 4827815
Alignment:
| Q |
377 |
gaatactcgtctatttcgaactatatagcctgtaatgtat |
416 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
4827776 |
gaatactcgtctatttcgaaccatatagcttgtaatgtat |
4827815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 194
Target Start/End: Original strand, 8692457 - 8692504
Alignment:
| Q |
147 |
ccaaaaagatgagagcattccagaatctccacaagaaccacacaacaa |
194 |
Q |
| |
|
||||||||||| ||||||| | | |||||||||||||||||||||||| |
|
|
| T |
8692457 |
ccaaaaagatgtgagcatttcgggatctccacaagaaccacacaacaa |
8692504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University