View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19413_low_11 (Length: 357)
Name: NF19413_low_11
Description: NF19413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19413_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 12 - 337
Target Start/End: Original strand, 1890577 - 1890902
Alignment:
| Q |
12 |
tcatcatgaaaaacatctcacagaaattctgaacttcagcagaatttgtgattgttgtgtaactgatagaacttagaagtcagagaaaatatgacaagaa |
111 |
Q |
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| T |
1890577 |
tcatcatgaaaaacatctcatagaaattctgaacttcagcagaatttgtgattgttgtgtaactgatagaacttagaagtcagagaaaatatgagaagaa |
1890676 |
T |
|
| Q |
112 |
gatggtcattttacaaggatgttttgccacctgtggtgatcataggacaggaaactattgaaatggctttactcactttgttcaaagcagccacacttca |
211 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1890677 |
gatggtccttttacaaggatgttttgccacctgtggtgatcataggacaggaaactattgaaatggctttactcactttgttcaaagcagccacacttca |
1890776 |
T |
|
| Q |
212 |
agggatgaacaatcatgtctttgttgcctatgcttatgctattggtactgctattctccttcctatcacnnnnnnnagaagaaggtaagtttgtcagaat |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1890777 |
agggatgaacaatcatgtctttgttgcctatgcttatgctattggtactgctattctccttcctatcactttttttagaagaaggtaagtttgtcagaat |
1890876 |
T |
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| Q |
312 |
cacggtgttagaacaacatatgtata |
337 |
Q |
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|||||||||||||||||||||||||| |
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| T |
1890877 |
cacggtgttagaacaacatatgtata |
1890902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 102 - 280
Target Start/End: Original strand, 1895517 - 1895695
Alignment:
| Q |
102 |
atgacaagaagatggtcattttacaaggatgttttgccacctgtggtgatcataggacaggaaactattgaaatggctttactcactttgttcaaagcag |
201 |
Q |
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| T |
1895517 |
atgacaagaagatggtccttttacatggatgttttgccaattttagtgatcataggacaggaaactattgaaatggctttactcactttgttcaaagcag |
1895616 |
T |
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| Q |
202 |
ccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggtactgctattctccttcctatcac |
280 |
Q |
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| T |
1895617 |
ccacaaatcaagggatgaacaaccatgtctttgttgcttattcttatgctgttggtacttctgttcttcttcctgtcac |
1895695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 37 - 324
Target Start/End: Original strand, 1883959 - 1884245
Alignment:
| Q |
37 |
attctgaacttcagcagaatttgtgattgttgtgtaactgatagaacttagaagtcagagaaaatatgacaagaagatggtcattttacaaggatgtttt |
136 |
Q |
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| T |
1883959 |
attctgaacttcaacaaggtttgtgattgttgtatataggataaaacttagaacacatagaaag-atgacaagaaaacggtccttttacatggattttct |
1884057 |
T |
|
| Q |
137 |
gccacctgtggtgatcataggacaggaaactattgaaatggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgtt |
236 |
Q |
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| T |
1884058 |
gccacctgttgtgattataggcaatgaatgtgttgacatggctttactgactttgttcaaagcagctacacttcaagggatgaacaatcatgtctttgtt |
1884157 |
T |
|
| Q |
237 |
gcctatgcttatgctattggtactgctattctccttcctatcacnnnnnnnagaagaaggtaagtttgtcagaatcacggtgttagaa |
324 |
Q |
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| T |
1884158 |
gcctatgcttatgctgttgcaacttcttttctccttcctatcactttttttagaagaaggtaagtttgacagaatcacgacgttagaa |
1884245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 56 - 260
Target Start/End: Original strand, 1910928 - 1911131
Alignment:
| Q |
56 |
tttgtgattgttgtgtaactgatagaacttagaagtcagagaaaatatgacaagaagatggtcattttacaaggatgttttgccacctgtggtgatcata |
155 |
Q |
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|||||||||||||||||||||| ||||| ||||||| | ||||| ||||||||||||||||| || |||| ||||||| ||||||||| ||||| ||| |
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| T |
1910928 |
tttgtgattgttgtgtaactgaaagaacatagaagtgacagaaac-atgacaagaagatggtccttgtacatggatgttctgccacctgctgtgattata |
1911026 |
T |
|
| Q |
156 |
ggacaggaaactattgaaatggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattg |
255 |
Q |
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| | ||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||| ||| |
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| T |
1911027 |
tgctatgaatgtattgacatggctttactcactttgttcaaagcagctacacttcaagggatgaacaatcatgtctttattgcttatgcttatgctgttg |
1911126 |
T |
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| Q |
256 |
gtact |
260 |
Q |
| |
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||||| |
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| T |
1911127 |
gtact |
1911131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 102 - 257
Target Start/End: Original strand, 1901928 - 1902083
Alignment:
| Q |
102 |
atgacaagaagatggtcattttacaaggatgttttgccacctgtggtgatcataggacaggaaactattgaaatggctttactcactttgttcaaagcag |
201 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||||||||| ||||| | ||| | ||| |||||||||||||||||||||||||| | |
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| T |
1901928 |
atgacaagaagatggtcactttacatggatgttttgccacctgtggtgattataggcaatgaatgttctgacatggctttactcactttgttcaaagctg |
1902027 |
T |
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| Q |
202 |
ccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggt |
257 |
Q |
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|||||||||||||||||||| ||||||||| |||| |||||||||||| ||||| |
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| T |
1902028 |
taacacttcaagggatgaacaaccatgtctttattgcttatgcttatgctgttggt |
1902083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 175 - 280
Target Start/End: Original strand, 1878084 - 1878189
Alignment:
| Q |
175 |
tggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggtactgctattctccttcc |
274 |
Q |
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|||||||| ||| ||| | |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||| || |||||||||| |
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| T |
1878084 |
tggctttagtcattttatacaaagcagccacacttcaagggatgaacaactatgtttttgttgcctatgcttatgctgttggtacttctgttctccttcc |
1878183 |
T |
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| Q |
275 |
tatcac |
280 |
Q |
| |
|
|||||| |
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| T |
1878184 |
tatcac |
1878189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 11537528 - 11537577
Alignment:
| Q |
174 |
atggctttactcactttgttcaaagcagccacacttcaagggatgaacaa |
223 |
Q |
| |
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|||| ||| |||||||||||||||||||| |||| |||||||||||||| |
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| T |
11537528 |
atgggtttgctcactttgttcaaagcagcaccactgcaagggatgaacaa |
11537577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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