View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19413_low_15 (Length: 301)
Name: NF19413_low_15
Description: NF19413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19413_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 284
Target Start/End: Original strand, 3015500 - 3015771
Alignment:
| Q |
13 |
cacagaaacataaaggggtttaaatttcacattccacacaaattcacccaaattttacatgtttctctcttacagcatgacatataactcttaggtatca |
112 |
Q |
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| T |
3015500 |
cacagaaacataaaggggtttaaatttcacattccacacaaattcacccaaattttacatgtttctctcttacagcatgacatataactcttaggtatca |
3015599 |
T |
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| Q |
113 |
ctacattcggtgcagttaaaatccaactataccgacgttgtactgtagtggaatttgaacacatcactatttttccttgatatgctatttggtgcacatt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3015600 |
ctacattcggtgcagttaaaatccaactataccgacgttgtactgtagtggaatttgaacacatcactatttttccttgatatgctatttggtgcacatt |
3015699 |
T |
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| Q |
213 |
gtttcaaatagcggcactataacacttgtgtaacggaatttgaacaaaacgttattttctacaatttcaaat |
284 |
Q |
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| T |
3015700 |
gtttcaaatagcggtactataacacttgcgtaacggaatttgaacaaaacgttattttctacaatttcaaat |
3015771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 260
Target Start/End: Original strand, 17504936 - 17505037
Alignment:
| Q |
162 |
ggaatttgaacacatcactatttttccttgatatgctatttggtgcacattgtt-tcaaatagcggcactataacac--ttgtgtaacggaatttgaaca |
258 |
Q |
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|||||||||||| |||| |||| ||| |||||||| |||| ||||| | | || | ||||||| |||||||||||| ||||||| ||||||||||||| |
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| T |
17504936 |
ggaatttgaacagatcattattgttctgtgatatgcaatttagtgcaaaatattgtgaaatagcagcactataacactgttgtgtagcggaatttgaaca |
17505035 |
T |
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| Q |
259 |
aa |
260 |
Q |
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|| |
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| T |
17505036 |
aa |
17505037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 185
Target Start/End: Original strand, 8594725 - 8594754
Alignment:
| Q |
156 |
tgtagtggaatttgaacacatcactatttt |
185 |
Q |
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| T |
8594725 |
tgtagtggaatttgaacacatcactatttt |
8594754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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