View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19413_low_16 (Length: 300)
Name: NF19413_low_16
Description: NF19413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19413_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 4676803 - 4677087
Alignment:
| Q |
1 |
agtgttcatgtgagggtacctcagttagtacccgtctatttactagtatctatagcaaggatataagactttaattaaaaaactagttaagtttcatgat |
100 |
Q |
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| T |
4676803 |
agtgttcatgtgagggtaactcagttagtacccgtctatccactagtatctatagcaaggatataagactttaattaaaaaactagttaagtttcatgat |
4676902 |
T |
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| Q |
101 |
aataagaacaatatcttaatagaaaaagaggaacggcaagggagcttgcaacaaactatttatctttttcgattctcatattctcttttctttgcacttt |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4676903 |
aataagaacaatatcttaataaaaaaagaggaacggcaagggagcttgcaacaaactatttatctttttcgattctcatgttctcttttctttgcacttt |
4677002 |
T |
|
| Q |
201 |
cctttacccttcccttgttttcattatttcttgttgtgacctat---ttatatatttccatcgctacagcctacatgtaccattt |
282 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4677003 |
cctttacccttcccttgttttcattatttcttggtgtgacctatttattatatatttccatcgctacagcctacatgtaccattt |
4677087 |
T |
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