View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19413_low_20 (Length: 264)
Name: NF19413_low_20
Description: NF19413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19413_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 31658812 - 31659044
Alignment:
| Q |
19 |
cctctattgtagatgcaagaaatggcaatggtgatggtggaaacgagttttcttctttaattggaatgttgttatcaaaactgagtaatatagaagagtc |
118 |
Q |
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| T |
31658812 |
cctcttttgtagatgcaagaaatggcaatggtgatggtggaaacgagttttcttctttaattggaatgttgttatcaaaactaagtaatatagaagagtc |
31658911 |
T |
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| Q |
119 |
atttgatgacacaatggattccaaatttatatctgaatgcaaataacttttgcaagtgtgatggccataatatgcagtcctatacaatggagggttctct |
218 |
Q |
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| T |
31658912 |
atttgatgacaaaatggattccaaatttatatctgaatgcaaataacttttgcaagtgtgatggccataatatgcagtcctatacaatggagggttctct |
31659011 |
T |
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| Q |
219 |
tgagttctttgaacatgtttgattgcttcacag |
251 |
Q |
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| T |
31659012 |
tgagttctttcaacatgtttgattgcttcacag |
31659044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 83 - 250
Target Start/End: Complemental strand, 31657342 - 31657175
Alignment:
| Q |
83 |
aatgttgttatcaaaactgagtaatatagaagagtcatttgatgacacaatggattccaaatttatatctgaatgcaaataacttttgcaagtgtgatgg |
182 |
Q |
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| T |
31657342 |
aatgttgttatcgaaactaagtaatatagaagagtcatcgtagcacaaaatggattccaattttatgtctgaatggtaagagcttttgcaagtgtgatgg |
31657243 |
T |
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| Q |
183 |
ccataatatgcagtcctatacaatggagggttctcttgagttctttgaacatgtttgattgcttcaca |
250 |
Q |
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| T |
31657242 |
tcataatatgtagtccggtacaaaggagggttctcttgaattctttgaacatgtttgattgcttcaca |
31657175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 250
Target Start/End: Complemental strand, 31650398 - 31650164
Alignment:
| Q |
25 |
ttgtagatgcaagaaatggcaatggtg---atggtggaaacgagttttcttctttaattggaatgttgttatca---aaactgagtaatatagaagagtc |
118 |
Q |
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| T |
31650398 |
ttgtagatgcaagaagtggcaatggtggtgatggtcgaaatggatattcttgtttatttgaaatgttgttattatcgaaactaagtaatattgaagagtc |
31650299 |
T |
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| Q |
119 |
a---tttgatgacacaatggattccaaatttatatctgaatgcaaataacttttgcaagtgtgatggccataatatgcagtcctatacaatggagggttc |
215 |
Q |
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| T |
31650298 |
aacatcataggagaaaattgattccaaatttaagtctgaatggtaagagcttttgcaagtgtgatggccataatatgtagtccggtacaacgaagggttc |
31650199 |
T |
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| Q |
216 |
tcttgagttctttgaacatgtttgattgcttcaca |
250 |
Q |
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| T |
31650198 |
ttttgtattctttgaacatgtttgattgcttcaca |
31650164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 31628760 - 31628832
Alignment:
| Q |
166 |
ttttgcaagtgtgatggccataatatgcagtcctatacaatggagggttctcttgagttctttgaacatgttt |
238 |
Q |
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| T |
31628760 |
ttttgcaattatgatggccataatatatggttctgtataatggagggtcctcttgaattctttgcacatgttt |
31628832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 250
Target Start/End: Complemental strand, 31678631 - 31678547
Alignment:
| Q |
166 |
ttttgcaagtgtgatggccataatatgcagtcctatacaatggagggttctcttgagttctttgaacatgtttgattgcttcaca |
250 |
Q |
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| T |
31678631 |
ttttgcaactatgatggccataatatatggttctgtataatggagggtcctcttgaattctctgcacatgtttcatagcttcaca |
31678547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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