View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19413_low_22 (Length: 231)
Name: NF19413_low_22
Description: NF19413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19413_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 66 - 227
Target Start/End: Complemental strand, 29841911 - 29841750
Alignment:
| Q |
66 |
gatgatcaacattccgaatattccattcaatcacaaaaccacctcttagtgaaaatacataggtttttctttacacactttgcgcttgtattatacttgt |
165 |
Q |
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| T |
29841911 |
gatgatcaacattccgaatatttcattcaatcacaaaaccacctcttcgtgaaaatacataggtttttctttacacactttgtgcttgtattatacttgt |
29841812 |
T |
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| Q |
166 |
ttcgctacaattcacaagtcaattttacacacaaccacttgcaaaaattctgtatactaaat |
227 |
Q |
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| T |
29841811 |
ttcgctacaattcacaagtcaattttacacacaaccacttgcaaaaattctgtatactaaat |
29841750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 66 - 227
Target Start/End: Original strand, 29829573 - 29829736
Alignment:
| Q |
66 |
gatgatcaacattccgaatattccattcaatcacaaaaccacctcttagtgaaaatacataggtttttcttt--acacactttgcgcttgtattatactt |
163 |
Q |
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| T |
29829573 |
gatgatcaacattctgaatattccattcaaccacaaaaccaactcttggtgaaaatacataggtttttttttccacacactttgtgcttgtattatactt |
29829672 |
T |
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| Q |
164 |
gtttcgctacaattcacaagtcaattttacacacaaccacttgcaaaaattctgtatactaaat |
227 |
Q |
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| T |
29829673 |
gtttcaccccaatgcacaggtcaattttacacacaaccacttgcaaaaattctgtatattaaat |
29829736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 29829454 - 29829509
Alignment:
| Q |
13 |
caattcgtataaaaagcggaataaatgtactcaatcacaaaagtaacttggaggat |
68 |
Q |
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| T |
29829454 |
caattcgtataaaaagcggaatcaatgtactcaatcacaaaagtagcttggaggat |
29829509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 29842019 - 29841964
Alignment:
| Q |
13 |
caattcgtataaaaagcggaataaatgtactcaatcacaaaagtaacttggaggat |
68 |
Q |
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| T |
29842019 |
caattcgtataaaaagcggaatccatgtactcaatcacaaaagtagcttggaggat |
29841964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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