View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19413_low_23 (Length: 228)
Name: NF19413_low_23
Description: NF19413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19413_low_23 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 42731343 - 42731120
Alignment:
| Q |
1 |
aacaattgtcagcatgataagacttactaacagttgaaattatttgcaactttcctatcatgattcaaatcattaacagttctatttatagaaacaaatg |
100 |
Q |
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| T |
42731343 |
aacaattgtcagcatgataagacttactaacagttgaaattatttgcaactttcctatcatgattcaaatcattaacagttctatttatagaaacaaatg |
42731244 |
T |
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| Q |
101 |
taaagtattttttgcttaacaactcatactcatacacatctgacacagtaagtaaatttttatgcagtaactatttaatactaagaaatgcaacagaaat |
200 |
Q |
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| T |
42731243 |
taaagtattttttgcttaacaactcatactcatacacatctgacacagtaagtaaatttttatgcagtaactatttaatactaagaaatgcaacagaaat |
42731144 |
T |
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| Q |
201 |
gatttgcttgcttagttaataaaataaa |
228 |
Q |
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| T |
42731143 |
gat----gtgcttagttaataaaataaa |
42731120 |
T |
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