View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19413_low_4 (Length: 587)

Name: NF19413_low_4
Description: NF19413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19413_low_4
NF19413_low_4
[»] chr7 (11 HSPs)
chr7 (1-195)||(31166874-31167068)
chr7 (7-191)||(21971546-21971729)
chr7 (99-185)||(27595999-27596084)
chr7 (87-197)||(32741787-32741897)
chr7 (1-97)||(27596384-27596480)
chr7 (87-195)||(28750927-28751034)
chr7 (87-195)||(38916392-38916500)
chr7 (109-195)||(21972092-21972177)
chr7 (87-191)||(27230474-27230578)
chr7 (89-166)||(15577501-15577578)
chr7 (83-123)||(21948168-21948208)
[»] chr2 (8 HSPs)
chr2 (1-195)||(39865218-39865412)
chr2 (2-195)||(29770774-29770967)
chr2 (1-195)||(4329606-4329801)
chr2 (109-195)||(4330136-4330221)
chr2 (87-195)||(9074605-9074713)
chr2 (87-195)||(30674429-30674537)
chr2 (87-191)||(9914204-9914308)
chr2 (109-173)||(29771299-29771362)
[»] chr8 (5 HSPs)
chr8 (1-195)||(26759211-26759405)
chr8 (14-194)||(146644-146825)
chr8 (87-195)||(186682-186790)
chr8 (87-195)||(308312-308420)
chr8 (109-172)||(147190-147252)
[»] chr3 (7 HSPs)
chr3 (1-195)||(23566809-23567003)
chr3 (1-195)||(39737644-39737838)
chr3 (87-171)||(30385749-30385833)
chr3 (109-173)||(39737230-39737293)
chr3 (109-173)||(23566459-23566522)
chr3 (87-171)||(53153855-53153939)
chr3 (87-193)||(785770-785876)
[»] chr5 (4 HSPs)
chr5 (1-195)||(39121754-39121948)
chr5 (87-195)||(14393983-14394091)
chr5 (87-195)||(25672272-25672380)
chr5 (88-195)||(20983551-20983658)
[»] chr4 (13 HSPs)
chr4 (1-195)||(12639641-12639835)
chr4 (14-198)||(28103803-28103988)
chr4 (81-195)||(38147399-38147513)
chr4 (107-195)||(917684-917772)
chr4 (87-171)||(23643434-23643518)
chr4 (109-174)||(28104360-28104424)
chr4 (87-195)||(43012762-43012870)
chr4 (1-48)||(918696-918743)
chr4 (109-171)||(12639211-12639273)
chr4 (109-172)||(919115-919177)
chr4 (87-171)||(54714873-54714957)
chr4 (85-116)||(918651-918682)
chr4 (78-123)||(23037993-23038038)
[»] chr6 (6 HSPs)
chr6 (367-569)||(31089768-31089972)
chr6 (87-195)||(604985-605096)
chr6 (304-353)||(31090032-31090081)
chr6 (87-195)||(8700896-8701004)
chr6 (87-171)||(12307301-12307385)
chr6 (87-171)||(7727381-7727465)
[»] chr1 (1 HSPs)
chr1 (87-168)||(40888819-40888900)
[»] scaffold0009 (2 HSPs)
scaffold0009 (76-120)||(4021-4065)
scaffold0009 (76-120)||(4402-4446)


Alignment Details
Target: chr7 (Bit Score: 171; Significance: 2e-91; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 31166874 - 31167068
Alignment:
Q  1 gatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaagagtattgaatatagct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  31166874 gatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataattgttgtgcctttgaatattgaaagagtattgaatatagct 31166973  T
Q  101 tttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgttccttatcc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||  |||||||||||||||||||    
T  31166974 tttattatttttaattagttgacatatattatactttaattgagatgaattaagtgagattcatttatttaattactatttattgttccttatcc 31167068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 7 - 191
Target Start/End: Complemental strand, 21971729 - 21971546
Alignment:
Q  7 agtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaagagtattgaatatagcttttatt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||| ||| ||||||||||||||||||||||    
T  21971729 agtcatatggttgtgtaaacagatggaatggaaaggacgcgtctgcataataatggttgtgcctttgaatattaaaaaagtattgaatatagcttttatt 21971630  T
Q  107 atttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgttcctt 191  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||| ||||||||||||||||    
T  21971629 atttttaattagttgacatatattatactttaattgagatgagttaagtgagat-catttatttaattattatttattgttcctt 21971546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 99 - 185
Target Start/End: Complemental strand, 27596084 - 27595999
Alignment:
Q  99 cttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattg 185  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||| | | |||||||||    
T  27596084 cttttattatttttaattagttgac-tatattacactttaattgagatgaattaagtgagatccatttatttattggctatttattg 27595999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 87 - 197
Target Start/End: Original strand, 32741787 - 32741897
Alignment:
Q  87 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 186  Q
    ||||||||||||| ||||||| |||||| ||||||| |||| ||||||||||||| || | ||  |||| ||||||||||||||| |  |||||||||||    
T  32741787 tattgaatatagcatttattaattttaaatagttgaaatattttatactttaattaaggtaaaccaagtgagatccatttatttattgcttatttattgt 32741886  T
Q  187 tccttatcccg 197  Q
    || ||||||||    
T  32741887 tcattatcccg 32741897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 27596480 - 27596384
Alignment:
Q  1 gatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaagagtattgaatata 97  Q
    |||| ||||||||||||| ||||||||||||||||| ||| | ||||| | ||||||||| || |||| |||||  |||||||||||||||||||||    
T  27596480 gataacagtcatatggttatgtaaacagatggaatgaaaaaggcgcgtttgtataataatagtcgtgcctttgagaattgaaagagtattgaatata 27596384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 195
Target Start/End: Original strand, 28750927 - 28751034
Alignment:
Q  87 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 186  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||| ||||||||| || | || ||||| ||||||||||||||| |   ||||||||||    
T  28750927 tattgaatata-catttattaattttaattagttgaaatattttacactttaattaaggtaaactaagtgagatccatttatttattgcctatttattgt 28751025  T
Q  187 tccttatcc 195  Q
    |||||||||    
T  28751026 tccttatcc 28751034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 87 - 195
Target Start/End: Original strand, 38916392 - 38916500
Alignment:
Q  87 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgt-tatttattg 185  Q
    |||| |||||| | ||||||| |||||||||||||| |||| ||| ||||||||| || | ||| |||| |||||||||||||| ||||| |||||||||    
T  38916392 tattaaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaagtgagatccatttattt-attgtctatttattg 38916490  T
Q  186 ttccttatcc 195  Q
    ||| ||||||    
T  38916491 ttctttatcc 38916500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 109 - 195
Target Start/End: Original strand, 21972092 - 21972177
Alignment:
Q  109 ttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgttccttatcc 195  Q
    ||||||||||||||||||| ||| | ||||||| ||||||||||||| |||| ||||||||||||   | || ||||||||||||||    
T  21972092 ttttaattagttgacatattttaca-tttaattaagatgaattaagtgagattcatttatttaatgcattttaattgttccttatcc 21972177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 87 - 191
Target Start/End: Complemental strand, 27230578 - 27230474
Alignment:
Q  87 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgt-tatttattg 185  Q
    ||||||||||||| ||||||| |||||||||||||| |||| ||| ||||||||| || | ||| || | |||| ||||||||| ||||| |||| ||||    
T  27230578 tattgaatatagcatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaaatgagattcatttattt-attgtctattaattg 27230480  T
Q  186 ttcctt 191  Q
    ||||||    
T  27230479 ttcctt 27230474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 15577578 - 15577501
Alignment:
Q  89 ttgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccattt 166  Q
    ||||||||| | ||||||| |||||||||||||| |||| ||| ||||||||| || | || ||||| ||||||||||    
T  15577578 ttgaatatatcatttattaattttaattagttgaaatattttacactttaattaaggtaaactaagtgagatccattt 15577501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 21948208 - 21948168
Alignment:
Q  83 agagtattgaatatagcttttattatttttaattagttgac 123  Q
    ||||||||||||| || |||||||| |||||||||||||||    
T  21948208 agagtattgaatagagtttttattaattttaattagttgac 21948168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 171; Significance: 2e-91; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 39865218 - 39865412
Alignment:
Q  1 gatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaagagtattgaatatagct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  39865218 gatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataattgttgtgcctttgaatattgaaagagtattgaatatagct 39865317  T
Q  101 tttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgttccttatcc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||  |||||||||||||||||||    
T  39865318 tttattatttttaattagttgacatatattatactttaattgagatgaattaagtgagattcatttatttaattactatttattgttccttatcc 39865412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 2 - 195
Target Start/End: Complemental strand, 29770967 - 29770774
Alignment:
Q  2 atagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaagagtattgaatatagctt 101  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||| ||||||||    
T  29770967 atagcagtcatatggtggtgtaaacagatggaatggaaaggacgcgtctctgtaataatggttatgcctttgaatattgaaagagtattgattatagctt 29770868  T
Q  102 ttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgttccttatcc 195  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||  |||||||||||||||||||    
T  29770867 ttattatttttaattagttgacatatattatactttaactgagatgaattaagtgagattcatttatttaattactatttattgttccttatcc 29770774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 4329801 - 4329606
Alignment:
Q  1 gatagcagtcatatggttgtgtaaacagatggaatggaaaggac-gcgtctctataataatggttgtgcatttgaatattgaaagagtattgaatatagc 99  Q
    ||||||| ||||||| || |||||||| |||||||||||||||| |||| | ||| ||||| ||||||| |||||  |||||||||||||||||||||||    
T  4329801 gatagcaatcatatgattctgtaaacatatggaatggaaaggaccgcgtatgtatgataatagttgtgcctttgagaattgaaagagtattgaatatagc 4329702  T
Q  100 ttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgttccttatcc 195  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |   |||||| ||||||||||||    
T  4329701 ttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatctatttatttattaactatttactgttccttatcc 4329606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 109 - 195
Target Start/End: Original strand, 4330136 - 4330221
Alignment:
Q  109 ttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgttccttatcc 195  Q
    |||||||||||| |||||| ||| | ||||||||||||||||||||| |||||||||||||||||   |||| ||||||||||||||    
T  4330136 ttttaattagttaacatattttaca-tttaattgagatgaattaagtgagatccatttatttaatgcatattaattgttccttatcc 4330221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 9074713 - 9074605
Alignment:
Q  87 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgt-tatttattg 185  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||| ||||||||| || | ||  |||| ||||||||||||||| |||| |||||||||    
T  9074713 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaagtgagatccatttattta-ttgtctatttattg 9074615  T
Q  186 ttccttatcc 195  Q
    ||| ||||||    
T  9074614 ttctttatcc 9074605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 87 - 195
Target Start/End: Original strand, 30674429 - 30674537
Alignment:
Q  87 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 186  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||| | ||||||| |||| ||| |||| ||||| ||||||||| |  ||||| |||||    
T  30674429 tattgaatataacatttattaattttaattagttgaaatattttacattttaattaagataaatcaagtgagatctatttatttattgcttattaattgt 30674528  T
Q  187 tccttatcc 195  Q
    || ||||||    
T  30674529 tctttatcc 30674537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 191
Target Start/End: Complemental strand, 9914308 - 9914204
Alignment:
Q  87 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 186  Q
    ||||||||||||| ||||||| ||||| |||||||| |||| ||| ||||||||| |  | ||| |||| |||| |||||||||| |   ||||||||||    
T  9914308 tattgaatatagcatttattaattttagttagttgaaatattttacactttaattaaagtaaatcaagtgagattcatttatttattacctatttattgt 9914209  T
Q  187 tcctt 191  Q
    |||||    
T  9914208 tcctt 9914204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 29771299 - 29771362
Alignment:
Q  109 ttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaat 173  Q
    ||||||||||||||||||| ||| | | ||||||||||||||||||| |||| ||||||||||||    
T  29771299 ttttaattagttgacatattttaca-tataattgagatgaattaagtgagattcatttatttaat 29771362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 163; Significance: 9e-87; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 26759405 - 26759211
Alignment:
Q  1 gatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaagagtattgaatatagct 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||    
T  26759405 gataacagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcctttgaatattaaaagagtatttaatatagct 26759306  T
Q  101 tttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgttccttatcc 195  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||    
T  26759305 tttattatttttaattagttggcatatattatactttaattgagatgaattaagtgagatccatttatttaattactatttattgttccttatcc 26759211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 146825 - 146644
Alignment:
Q  14 tggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaa-gagtattgaatatagcttttattattttt 112  Q
    ||||||| ||||||||||||||||||| ||||||| | ||||||||| || |||  |||||  ||||||| ||||||||||||||| |||||||| ||||    
T  146825 tggttgtataaacagatggaatggaaatgacgcgtttgtataataatagtcgtggctttgagaattgaaaagagtattgaatatagtttttattaatttt 146726  T
Q  113 aattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgttccttatc 194  Q
    ||||||||||||||||||| |||||||||||||| ||| |||| ||||||||||||||||| | |||||||||||| |||||    
T  146725 aattagttgacatatattacactttaattgagattaataaagtgagatccatttatttaatggctatttattgttcattatc 146644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 186790 - 186682
Alignment:
Q  87 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 186  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||| | ||||||| |||| ||| |||| ||||||||||||||| | | ||||||||||    
T  186790 tattgaatataacatttattaattttaattagttgaaatattttacaatttaattaagataaatcaagtgagatccatttatttattagctatttattgt 186691  T
Q  187 tccttatcc 195  Q
    |||||||||    
T  186690 tccttatcc 186682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 308420 - 308312
Alignment:
Q  87 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 186  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||| ||||||||| || | || ||||| ||||||||||||||| |   ||||||||||    
T  308420 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaactaagtgagatccatttatttattgcctatttattgt 308321  T
Q  187 tccttatcc 195  Q
    || ||||||    
T  308320 tcattatcc 308312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 147190 - 147252
Alignment:
Q  109 ttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaa 172  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||||||| |||||||| |||||||    
T  147190 ttttaattagttgacatattttata-tttaattaagatgaattaagtgagatccatatatttaa 147252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 23566809 - 23567003
Alignment:
Q  1 gatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaagagtattgaatatagct 100  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  23566809 gatagcagtcatatggttgtttaaacagatggaatggaaaggatgcgtctctataataattgttgtgcctttgaatattgaaagagtattgaatatagct 23566908  T
Q  101 tttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgttccttatcc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||  |||||||||||||||||||    
T  23566909 tttattatttttaattagttgacatatattatactttaattgagatgaattaagtgatattcatttatttaattactatttattgttccttatcc 23567003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 39737644 - 39737838
Alignment:
Q  1 gatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaagagtattgaatatagct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| | ||| |||||||||||| ||||||||||||||    
T  39737644 gatagcagtcatatggttgtgtaaacagatggaatggaaaggacacgtctctatattaatggttgtacctttaaatattgaaagaatattgaatatagct 39737743  T
Q  101 tttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgttccttatcc 195  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||| ||||||||||||  |||||||||||||||||||    
T  39737744 tttattatttttaattagttaacatatattatattttaattgagatgaattaaataagatctatttatttaattactatttattgttccttatcc 39737838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 171
Target Start/End: Original strand, 30385749 - 30385833
Alignment:
Q  87 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttattta 171  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||| ||||||||| || | ||| || | |||||||||||||||    
T  30385749 tattgaatatatcatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaaatgagatccatttattta 30385833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 39737293 - 39737230
Alignment:
Q  109 ttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaat 173  Q
    ||||||||||||||||||| ||| | ||||||||||||| ||||||| |||| ||||||||||||    
T  39737293 ttttaattagttgacatattttaca-tttaattgagatggattaagtgagattcatttatttaat 39737230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 23566522 - 23566459
Alignment:
Q  109 ttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaat 173  Q
    ||||||||||||||||||  ||| | |||| |||||||||||||||||||||  |||||||||||    
T  23566522 ttttaattagttgacatagtttaca-tttatttgagatgaattaagtaagatttatttatttaat 23566459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 171
Target Start/End: Original strand, 53153855 - 53153939
Alignment:
Q  87 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttattta 171  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||| ||||||||| || | ||| |||| |||| ||| ||||||    
T  53153855 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaagtgagattcatctattta 53153939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 785770 - 785876
Alignment:
Q  87 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 186  Q
    |||||||||||||  |||||| ||||||||| |||  |||| ||| ||||| ||| || | ||| |||| ||||||||||||||| |   |||||| |||    
T  785770 tattgaatatagcaattattaattttaattaattgcaatattttacactttgattaaggtaaatcaagtgagatccatttatttattgcctatttaatgt 785869  T
Q  187 tccttat 193  Q
    |||||||    
T  785870 tccttat 785876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 155; Significance: 5e-82; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 39121754 - 39121948
Alignment:
Q  1 gatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaagagtattgaatatagct 100  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||    
T  39121754 gatagcagtcatacggttgtgtaaacagatggaatggaaatgacgcgtctctataataatggttgtgcctttgaatatcgaaagagtattgaatataact 39121853  T
Q  101 tttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgttccttatcc 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||  |||||||||||||||||||    
T  39121854 tttattatttttaattagttgacatatattatactttaattgagataaattaagtgagattcatttatttaattactatttattgttccttatcc 39121948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 14394091 - 14393983
Alignment:
Q  87 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 186  Q
    ||||||||||||| |||||||  ||||||||||||| |||| ||| | ||||||| |||| ||| |||| ||||||||||||||| |  |||||||||||    
T  14394091 tattgaatatagcatttattaaatttaattagttgaaatattttacattttaattaagataaatcaagtgagatccatttatttattgcttatttattgt 14393992  T
Q  187 tccttatcc 195  Q
    |||||||||    
T  14393991 tccttatcc 14393983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 25672380 - 25672272
Alignment:
Q  87 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 186  Q
    |||| |||||||| ||||||| |||||||||||||| |||| ||| ||||||||| | || ||  |||| ||||||||||||||| |   |||| |||||    
T  25672380 tattaaatatagcatttattaattttaattagttgaaatattttacactttaattaatataaaccaagtgagatccatttatttattgcatattcattgt 25672281  T
Q  187 tccttatcc 195  Q
    |||||||||    
T  25672280 tccttatcc 25672272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 195
Target Start/End: Complemental strand, 20983658 - 20983551
Alignment:
Q  88 attgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgt-tatttattgt 186  Q
    |||||||||| | ||||||| |||||||||||||| |||| ||| ||||||||| || | ||  || | |||||||||||||| ||||| |||||||| |    
T  20983658 attgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaaatgagatccatttattt-attgtctatttatttt 20983560  T
Q  187 tccttatcc 195  Q
    | |||||||    
T  20983559 ttcttatcc 20983551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 3e-65; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 12639641 - 12639835
Alignment:
Q  1 gatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaagagtattgaatatagct 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |  || | |||||  ||||||||||||||||||||||||    
T  12639641 gatagcaatcatatggttgtgtaaacagatggaatggaaaggatgcgtctctataataatagacgtacctttgagaattgaaagagtattgaatatagct 12639740  T
Q  101 tttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgttccttatcc 195  Q
    ||||||||||||||||||||||||||| ||| |||||||||||| |||||||||| ||||||||||||||| |   |||||||||||||||||||    
T  12639741 tttattatttttaattagttgacatattttacactttaattgaggtgaattaagtgagatccatttatttattgcctatttattgttccttatcc 12639835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 28103988 - 28103803
Alignment:
Q  14 tggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattg-aaagagtattgaatatagcttttattattttt 112  Q
    ||||||||| ||||  ||||||||||||||||||| | ||||||||| || |||| |||||  |||| ||||||||||||||||||||||||||||||||    
T  28103988 tggttgtgtgaacatgtggaatggaaaggacgcgtttgtataataatagtcgtgcctttgagaattggaaagagtattgaatatagcttttattattttt 28103889  T
Q  113 aattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgttccttatcccgt 198  Q
    ||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||    
T  28103888 aattagttgacatatattacactctaattgagatgaattaagtgagatccatttatttaatgattatttattgttccttatcccgt 28103803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 81 - 195
Target Start/End: Complemental strand, 38147513 - 38147399
Alignment:
Q  81 aaagagtattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatt 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |   ||||    
T  38147513 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatccatttatttattgactatt 38147414  T
Q  181 tattgttccttatcc 195  Q
    || ||||||||||||    
T  38147413 tactgttccttatcc 38147399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 917772 - 917684
Alignment:
Q  107 atttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgttccttatcc 195  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| | |||| |||||||||| |   |||||||||||| ||||||    
T  917772 atttttaattagttgacatatattacactttaattgagatgaattaacttagattcatttatttattgactatttattgttctttatcc 917684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 171
Target Start/End: Complemental strand, 23643518 - 23643434
Alignment:
Q  87 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttattta 171  Q
    ||||||||||||| ||||||| |||||||||||||| |||| ||| ||||||||| |||| ||| |||| ||||| |||||||||    
T  23643518 tattgaatatagcatttattaattttaattagttgaaatattttacactttaattaagataaatgaagtgagatcaatttattta 23643434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 28104360 - 28104424
Alignment:
Q  109 ttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaatt 174  Q
    |||||||||||||| |||| ||| | ||||||||||||||||||||| ||||||||||||||||||    
T  28104360 ttttaattagttgatatattttaca-tttaattgagatgaattaagtgagatccatttatttaatt 28104424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 43012870 - 43012762
Alignment:
Q  87 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgt-tatttattg 185  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||| ||||||||| || | ||  || | |||||||||||||| ||||| |||||||||    
T  43012870 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaaatgagatccatttattt-attgtctatttattg 43012772  T
Q  186 ttccttatcc 195  Q
    ||||||||||    
T  43012771 ttccttatcc 43012762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 918743 - 918696
Alignment:
Q  1 gatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgt 48  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||    
T  918743 gatagcagtcatatgattgtgtcaacagatggaatggaaaggacgcgt 918696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 12639273 - 12639211
Alignment:
Q  109 ttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttattta 171  Q
    ||||||||||||||||||| ||| || ||||||||| | |||||||| |||||||||||||||    
T  12639273 ttttaattagttgacatattttacacattaattgaggtaaattaagtgagatccatttattta 12639211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 919115 - 919177
Alignment:
Q  109 ttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaa 172  Q
    |||||||||||||| |||| ||| | ||||||||||||||||||||| |||| |||||||||||    
T  919115 ttttaattagttgatatattttaca-tttaattgagatgaattaagtgagattcatttatttaa 919177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 171
Target Start/End: Original strand, 54714873 - 54714957
Alignment:
Q  87 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttattta 171  Q
    ||||||||||| | ||||||| ||||||||| || | |||| ||| ||||||||| |||| ||| |||| | |||||||||||||    
T  54714873 tattgaatataacatttattaattttaattatttaaaatattttacactttaattaagataaatcaagtgaaatccatttattta 54714957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 116
Target Start/End: Complemental strand, 918682 - 918651
Alignment:
Q  85 agtattgaatatagcttttattatttttaatt 116  Q
    ||||||||||||||||||||||||||||||||    
T  918682 agtattgaatatagcttttattatttttaatt 918651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 23037993 - 23038038
Alignment:
Q  78 ttgaaagagtattgaatatagcttttattatttttaattagttgac 123  Q
    |||| ||||||||||||| | ||||||||| |||||||||||||||    
T  23037993 ttgagagagtattgaatacaacttttattaattttaattagttgac 23038038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 6e-51; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 367 - 569
Target Start/End: Complemental strand, 31089972 - 31089768
Alignment:
Q  367 aaagaaatcattaagataccatattgcaatcaaaatcattctaataagcccttcaagcatctagatcttaccaaggagtctattttagttctaactgatc 466  Q
    |||||||| | ||||||||||||||||||||| |||||| |||||||||||||||| ||| | ||||||| ||||||||| ||||||| | |||||||||    
T  31089972 aaagaaattaataagataccatattgcaatcataatcatcctaataagcccttcaaacatttggatctta-caaggagtcaattttagatttaactgatc 31089874  T
Q  467 caaaaacagaagttattaaac--acaggagagctataacttaataatttagatataggaaaatg-ttataaacacattccattatatgcttgttcaatac 563  Q
    | ||||| ||| |||||||||  | | ||||||||||||||| ||||||||||||||||||||| ||||| ||||||||| ||| |||||||||||||||    
T  31089873 cgaaaacggaacttattaaacttaaaagagagctataacttattaatttagatataggaaaatgtttatatacacattcctttaaatgcttgttcaatac 31089774  T
Q  564 gatatt 569  Q
    ||||||    
T  31089773 gatatt 31089768  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 605096 - 604985
Alignment:
Q  87 tattgaatatagcttttattatttttaatta---gttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttat 183  Q
    ||||||||||| | ||||||| |||||||||   ||||| |||| ||||||||||||| || | ||| |||| ||||||||||||||| |   |||||||    
T  605096 tattgaatataacatttattaattttaattattagttgaaatattttatactttaattaaggtaaatcaagtgagatccatttatttattgcctatttat 604997  T
Q  184 tgttccttatcc 195  Q
    ||||||||||||    
T  604996 tgttccttatcc 604985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 31090081 - 31090032
Alignment:
Q  304 atgaagtttaattaaatattagactaaagacggtaagatatttatcaaaa 353  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  31090081 atgaggtttaattaaatattagactaaagacgataagatatttatcaaaa 31090032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 8701004 - 8700896
Alignment:
Q  87 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 186  Q
    ||||||||||| | ||||||| |||||||||||| | |||| ||| ||||||||| || | ||| |||| |||||||| |||||| |   ||||||||||    
T  8701004 tattgaatataacatttattaattttaattagttaaaatattttacactttaattaaggtaaatcaagtgagatccatctatttattgcctatttattgt 8700905  T
Q  187 tccttatcc 195  Q
    |||||||||    
T  8700904 tccttatcc 8700896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 87 - 171
Target Start/End: Original strand, 12307301 - 12307385
Alignment:
Q  87 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttattta 171  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||| ||||||||| |||| ||| |||| ||||| |||||||||    
T  12307301 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaagataaatcaagtgagatctatttattta 12307385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 171
Target Start/End: Original strand, 7727381 - 7727465
Alignment:
Q  87 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttattta 171  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||| ||||||||| || | ||  |||| ||||| |||||||||    
T  7727381 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaagtgagatcaatttattta 7727465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 87 - 168
Target Start/End: Complemental strand, 40888900 - 40888819
Alignment:
Q  87 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttat 168  Q
    ||||||||||||| ||||||| |||||||||||||| |||| ||| ||||||||| |||| ||| |||| ||||||||||||    
T  40888900 tattgaatatagcatttattaattttaattagttgaaatattttacactttaattaagataaatcaagttagatccatttat 40888819  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 4021 - 4065
Alignment:
Q  76 tattgaaagagtattgaatatagcttttattatttttaattagtt 120  Q
    |||||| | ||||||||||||| ||||||||| ||||||||||||    
T  4021 tattgagaaagtattgaatatatcttttattaattttaattagtt 4065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 4402 - 4446
Alignment:
Q  76 tattgaaagagtattgaatatagcttttattatttttaattagtt 120  Q
    |||||| | ||||||||||||| ||||||||| ||||||||||||    
T  4402 tattgagaaagtattgaatatatcttttattaattttaattagtt 4446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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