View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19413_low_8 (Length: 404)

Name: NF19413_low_8
Description: NF19413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19413_low_8
NF19413_low_8
[»] chr6 (11 HSPs)
chr6 (16-404)||(1884186-1884575)
chr6 (159-240)||(1878346-1878427)
chr6 (16-129)||(1878511-1878625)
chr6 (159-238)||(1905772-1905851)
chr6 (159-236)||(1895919-1895996)
chr6 (145-241)||(1911409-1911508)
chr6 (346-404)||(1890830-1890889)
chr6 (20-57)||(1896638-1896675)
chr6 (159-238)||(1916672-1916751)
chr6 (159-213)||(1891163-1891217)
chr6 (20-57)||(1891600-1891637)


Alignment Details
Target: chr6 (Bit Score: 358; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 16 - 404
Target Start/End: Complemental strand, 1884575 - 1884186
Alignment:
Q  16 cagaaagtgttggagaactgtaattaatagcaatataccccataatttgacatgaagatctgtttaacataaacaaaaccatgagaaccataaaattgaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1884575 cagaaagtgttggagaactgtaattaatagcaatataccccataatttgacatgaagatctgtttaacataaacaaaaccatgagaaccataaaattgaa 1884476  T
Q  116 gaccaaatataataaatttatattaacaaaatgctatttttcaattaccctatcgctccaagaagcacaattttgcatattatggagaaactgagtggat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1884475 gaccaaatataataaatttatattaacaaaatgctatttttcaattaccctatcgctccaagaagcacaattttgcatattatggagaaactgagtggat 1884376  T
Q  216 gaaccactcttgatctgcaaaaataataaaaataagtataacgtttgaaatcattgcgagtttgacaaaattaaggtcatatcgttattttgttgaaaca 315  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1884375 gaaccactcttgatctgcaaaaataataaaattaagtataatgtttgaaatcattgcgagtttgacaaaattaaggtcatattgttattttgttgaaaca 1884276  T
Q  316 tcaacgaattttgattttatcaaaacttcattctaacgtcgtgattctgtcaaacttaccttcttctaa-aaaagtgataggaaggagaa 404  Q
    |||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1884275 tcaatgaattttgattttaccaaaactttattctaacgtcgtgattctgtcaaacttaccttcttctaaaaaaagtgataggaaggagaa 1884186  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 1878427 - 1878346
Alignment:
Q  159 attaccctatcgctccaagaagcacaattttgcatattatggagaaactgagtggatgaaccactcttgatctgcaaaaata 240  Q
    ||||||||||||| |||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||    
T  1878427 attaccctatcgccccaagaagcacaattttgcataatatggaaaaactgagtggaggaaccactcttgatctgcaaaaata 1878346  T

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Target: chr6; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 1878625 - 1878511
Alignment:
Q  16 cagaaagtgttggagaactgtaattaatagcaatataccccataatttgacatgaagatctgtttaacat-aaaca-aaaccatgagaaccataaaattg 113  Q
    ||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||| |||||| ||||| ||||||| |||||||||||| |     
T  1878625 cagaaagtgttggagaactgtaactaatagcagtgtaccccataatttgacatgaagatctgtataacatgaaacacaaaccatcagaaccataaaa-ta 1878527  T
Q  114 aagaccaaatataata 129  Q
    | ||||||||||||||    
T  1878526 atgaccaaatataata 1878511  T

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Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 1905851 - 1905772
Alignment:
Q  159 attaccctatcgctccaagaagcacaattttgcatattatggagaaactgagtggatgaaccactcttgatctgcaaaaa 238  Q
    |||||||||| || |||||||||||| |||| |||||||| ||||||||||| ||| |||| ||||||||||||||||||    
T  1905851 attaccctattgcaccaagaagcacacttttacatattatagagaaactgagaggaggaacaactcttgatctgcaaaaa 1905772  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 1895996 - 1895919
Alignment:
Q  159 attaccctatcgctccaagaagcacaattttgcatattatggagaaactgagtggatgaaccactcttgatctgcaaa 236  Q
    |||||||||| || |||||||| ||||||||||||| |||||||||||||||||||  ||||||| |||| |||||||    
T  1895996 attaccctattgcaccaagaagtacaattttgcatactatggagaaactgagtggagaaaccactattgacctgcaaa 1895919  T

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Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 145 - 241
Target Start/End: Complemental strand, 1911508 - 1911409
Alignment:
Q  145 aatgctatttttcaattaccctatcgctccaagaagcacaattttgcatattatggagaaactgagtggatga---accactcttgatctgcaaaaataa 241  Q
    ||||| ||||| || ||||||||| || |||||||||||| |||||||||| ||||||||||||| |||| ||   ||  ||||||||||||||||||||    
T  1911508 aatgcaattttgcacttaccctattgccccaagaagcacacttttgcatataatggagaaactgattggaggaggaacagctcttgatctgcaaaaataa 1911409  T

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Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 404
Target Start/End: Complemental strand, 1890889 - 1890830
Alignment:
Q  346 ttctaacgtcgtgattctgtcaaacttaccttcttctaa-aaaagtgataggaaggagaa 404  Q
    |||||||  |||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  1890889 ttctaacaccgtgattctgacaaacttaccttcttctaaaaaaagtgataggaaggagaa 1890830  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 1896675 - 1896638
Alignment:
Q  20 aagtgttggagaactgtaattaatagcaatatacccca 57  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  1896675 aagtgttggagaactgtaattaataccaatatacccca 1896638  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 1916751 - 1916672
Alignment:
Q  159 attaccctatcgctccaagaagcacaattttgcatattatggagaaactgagtggatgaaccactcttgatctgcaaaaa 238  Q
    ||||||||||  | ||||||||  |||||||  |||  ||||||||||||||| || ||||||||||||||||| |||||    
T  1916751 attaccctatgaccccaagaagagcaattttaaataggatggagaaactgagttgaggaaccactcttgatctggaaaaa 1916672  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 1891217 - 1891163
Alignment:
Q  159 attaccctatcgctccaagaagcacaattttgcatattatggagaaactgagtgg 213  Q
    |||||||||| ||||||||||||||| ||||  ||||| |||||||||| |||||    
T  1891217 attaccctattgctccaagaagcacacttttcaatattgtggagaaacttagtgg 1891163  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 1891637 - 1891600
Alignment:
Q  20 aagtgttggagaactgtaattaatagcaatatacccca 57  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  1891637 aagtgttggagaactgtagttaataccaatatacccca 1891600  T

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