View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19413_low_9 (Length: 379)
Name: NF19413_low_9
Description: NF19413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19413_low_9 |
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| [»] scaffold0028 (2 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 201 - 363
Target Start/End: Original strand, 125764 - 125926
Alignment:
| Q |
201 |
actgagtttgcaaggagaagatttgaaaagagagtttctctttctcagcaagtgtaagtacaactcaagtgacatatgctttattcaaaacaccttttca |
300 |
Q |
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| T |
125764 |
actgagtttgcaaggagaagatttgaaaagagagtttctctttctcagcaagtgtaagtacaactgaagtgacatatgctttattcaaaacaccttttca |
125863 |
T |
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| Q |
301 |
aaatcttttgttggatttccctgctttccctcccttacggaagttgaagccttttctcctttg |
363 |
Q |
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| T |
125864 |
aaatcttttgttggatttccatgctttccctcccttacggaagttgaagccttttctcctttg |
125926 |
T |
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Target: scaffold0028; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 125564 - 125644
Alignment:
| Q |
1 |
aagaatattcagtataaacgttttgaaattattaccaggaagatgaacagttgagtatcacctgcaaaataacaacaaagg |
81 |
Q |
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| T |
125564 |
aagaatattcaatataaacgttttgaaattattaccaggaagatgaacagttgagtatcacctgcaaaataacaacaaagg |
125644 |
T |
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