View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19414_high_15 (Length: 303)
Name: NF19414_high_15
Description: NF19414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19414_high_15 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 45319093 - 45318791
Alignment:
| Q |
1 |
gggatctgcatgttttgaagctagaggagaagcatttgaacttcttcttgatttctttgtcccttccaacgaaattacaatttctcctgaaacattggtt |
100 |
Q |
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| T |
45319093 |
gggatctgcatgttttgaagctagaggagaagcatttgaacttcttcttgatttctttgtcccttccaacgaaattacaatttctcctgaaacattggtt |
45318994 |
T |
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| Q |
101 |
ttcctttccctccttttctgtgatgtaatccatggttttgtttcagtggcatgctgaataccatatttgcataaatcatggcaggaactcgcacgatcac |
200 |
Q |
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| T |
45318993 |
ttcctttccctccttttctgtgatgtactccatggttttgtttcagtggcatgctgaataccatatttgcataaatcatggcaggaactcgcacgatcac |
45318894 |
T |
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| Q |
201 |
gaagataacgtgaaagaatcttagccggaccttttgtgatagttattccctcgttaggatttgctttcttatcatcatattcagcctcaattttctcagg |
300 |
Q |
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| T |
45318893 |
gaagataacgtgaaagaatcttagccggaccttttgtgatagttattccctcgttaggatttgctttcttatcatcatattcagcctcaattttctcagg |
45318794 |
T |
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| Q |
301 |
ctc |
303 |
Q |
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||| |
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| T |
45318793 |
ctc |
45318791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 45318470 - 45318422
Alignment:
| Q |
255 |
taggatttgctttcttatcatcatattcagcctcaattttctcaggctc |
303 |
Q |
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| T |
45318470 |
taggatttgctttcttctcatcattttcagcctcaattttctcaggctc |
45318422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 299
Target Start/End: Complemental strand, 45318371 - 45318327
Alignment:
| Q |
255 |
taggatttgctttcttatcatcatattcagcctcaattttctcag |
299 |
Q |
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| T |
45318371 |
taggattttttttcttatcatcatcttcagcctcaattttctcag |
45318327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 303
Target Start/End: Complemental strand, 45318547 - 45318515
Alignment:
| Q |
271 |
atcatcatattcagcctcaattttctcaggctc |
303 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
45318547 |
atcatcatcttcagcctcaattttctcaggctc |
45318515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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