View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19414_high_17 (Length: 280)
Name: NF19414_high_17
Description: NF19414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19414_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 45318728 - 45318556
Alignment:
| Q |
1 |
tctctacctggtgaacaataattttctcagactccacctggttaagagtaggcgttgctttcttatcatcatcttcttcggcctcaattttctcaggctc |
100 |
Q |
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| T |
45318728 |
tctctacctggtgaacaataattttctcagactccacctggttaagagtaggcgttgctttcttatcatcatcttcttcggcctcaattttctcaggctc |
45318629 |
T |
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| Q |
101 |
tatctggttaccagtaattttctcagactccaccaggttaacagtaggatttgctttcttaccatcgtcgtcg |
173 |
Q |
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| T |
45318628 |
tatctggttaccagtaattttttcagactccaccaggttaactgtaggatttgctttcttaccatcgtcgtcg |
45318556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 45318805 - 45318659
Alignment:
| Q |
20 |
aattttctcagactccacctggttaagagtaggcgttgctttcttatcatcatcttcttcggcctcaattttctcaggctctatctggttaccagtaatt |
119 |
Q |
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| T |
45318805 |
aattttctcaggctccacctggttatcagtaggatttgttttcttatcatcatcatcttcagcctcaattttctcagtctctacctggtgaacaataatt |
45318706 |
T |
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| Q |
120 |
ttctcagactccaccaggttaacagtaggatttgctttcttaccatc |
166 |
Q |
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| T |
45318705 |
ttctcagactccacctggttaagagtaggcgttgctttcttatcatc |
45318659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 45318445 - 45318374
Alignment:
| Q |
191 |
ttcagcctcaattttctcaggctccatctctgcctggttaacgataattttttcatactccacctggtttat |
262 |
Q |
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| T |
45318445 |
ttcagcctcaattttctcaggctccgtctctgcctggttaacgataattttttcatactccacctggtttat |
45318374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 45318550 - 45318455
Alignment:
| Q |
65 |
atcatcatcttcttcggcctcaattttctcaggctctatctggttaccagtaattttctcagactccaccaggttaacagtaggatttgctttctt |
160 |
Q |
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| T |
45318550 |
atcatcatcatcttcagcctcaattttctcaggctctacctggttaacagtaattttctccgactccacctggttaactgtaggatttgctttctt |
45318455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 45318517 - 45318422
Alignment:
| Q |
2 |
ctctacctggtgaacaataattttctcagactccacctggttaagagtaggcgttgctttcttatcatcatcttcttcggcctcaattttctcaggctc |
100 |
Q |
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| T |
45318517 |
ctctacctggttaacagtaattttctccgactccacctggttaactgtaggatttgctttcttctcatca---ttttcagcctcaattttctcaggctc |
45318422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 45318419 - 45318327
Alignment:
| Q |
1 |
tctctacctggtgaacaataattttctcagactccacctggttaagagtaggcgttgctttcttatcatcatcttcttcggcctcaattttctcag |
96 |
Q |
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||||| |||||| ||| |||||||| ||| ||||||||||||| | |||||| || |||||||||||||| |||| |||||||||||||||| |
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| T |
45318419 |
tctctgcctggttaacgataattttttcatactccacctggtttatagtaggattttttttcttatcatcat---cttcagcctcaattttctcag |
45318327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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