View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19414_high_24 (Length: 247)
Name: NF19414_high_24
Description: NF19414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19414_high_24 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 16378680 - 16378446
Alignment:
| Q |
13 |
acgcttgtaatagatgtataaaatcaactgtatcattcccaaaacagtacctatcccatttggtacctaacaaatcaaacacaaaatgtaggtatacaaa |
112 |
Q |
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| T |
16378680 |
acgcttgtaatagaagtataaaatcaactgtatcattcccaaaacagtacctatcccatttggtacctaacaaatcaaacacaaaatgtaggtatacaaa |
16378581 |
T |
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| Q |
113 |
tataagccaacagaataaacatctgaattctaaaactgttatcaatatttcagaaagaaatgagatgaaaagactcttacataaatgaaggcatcgtcac |
212 |
Q |
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| T |
16378580 |
tataagccaacagaataaacatctgaattctaaaactgttatcaatatttcagaaagaaatgagatgaaaagactcttacataaatgaaggcatcgtcac |
16378481 |
T |
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| Q |
213 |
tgagtaatccataaagaaagaaggagatgctcatt |
247 |
Q |
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| T |
16378480 |
tgagtaatccataaagaaagaaggagatgctcatt |
16378446 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 1195182 - 1195252
Alignment:
| Q |
20 |
taatagatgtataaaatcaactgtatcattcccaaaacagtacctatcccatttggtacctaacaaatcaa |
90 |
Q |
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| T |
1195182 |
taatagaagtataatatcaactgggtcattcccaaaagggttcctatcccatttggcacctacaaaatcaa |
1195252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 30989552 - 30989622
Alignment:
| Q |
20 |
taatagatgtataaaatcaactgtatcattcccaaaacagtacctatcccatttggtacctaacaaatcaa |
90 |
Q |
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| T |
30989552 |
taatagaagtataatatcaactgggtcattcccaaaatggttcctatcccatttggcacctacaaaatcaa |
30989622 |
T |
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