View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19414_high_28 (Length: 211)
Name: NF19414_high_28
Description: NF19414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19414_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 3745221 - 3745040
Alignment:
| Q |
11 |
gaagaatatcaagaaaaagtgtgagaatggatttcaggttgatgggtttagatgctccagtgctacacgctttgcaccagatgatggatctttcagatga |
110 |
Q |
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| T |
3745221 |
gaagaaaatcaagaaaaagtgtgagaatggatttcaggttgatgggtttggatgctccagtgctacacgctcttcaccaaatgatggacctttcagatga |
3745122 |
T |
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| Q |
111 |
caatgtggagaagacatcatcacacaatgctccaactagatcctatgttagagatgccaaggcaatggctgctactcctgca |
192 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3745121 |
caatatggagaagacatcatcacacaatgctccaactagatcctatgttagagatgccaaggcaatggctgctactcctgca |
3745040 |
T |
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