View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19414_low_10 (Length: 347)
Name: NF19414_low_10
Description: NF19414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19414_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 4 - 338
Target Start/End: Original strand, 45282553 - 45282887
Alignment:
| Q |
4 |
atgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcatatactgtttcttcat |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
45282553 |
atgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcatatactctttcttcat |
45282652 |
T |
|
| Q |
104 |
tcataagtacataattaattaaataaaataaaaatgttttgatcgatgataattgaattacgtaccgaaagtggcggtttgcatggtcttgacaccagca |
203 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45282653 |
tcataagtaaataattaattaaataaaataaaaaagttttgatcgatgataattgaattaagtaccgaaggtggcggtttgcatggtcttgacaccagca |
45282752 |
T |
|
| Q |
204 |
gcaaagctctttctaccggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcataga |
303 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282753 |
gcaaagctctttctaccagtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcataga |
45282852 |
T |
|
| Q |
304 |
caccggccttaacgtagataacatatctgcctttg |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282853 |
caccggccttaacgtagataacatatctgcctttg |
45282887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 338
Target Start/End: Original strand, 45274310 - 45274646
Alignment:
| Q |
4 |
atgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcatatactgtttcttcat |
103 |
Q |
| |
|
||||||||||| ||| | | ||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |||||||| |
|
|
| T |
45274310 |
atgttatatgtatatatttctcttttcaatgcgagttatgttttcttcaaaaataaattttgagagtgatgctactttttcttatatactctttcttcaa |
45274409 |
T |
|
| Q |
104 |
tcataag-tacataattaattaaataaaataaaaat-gttttgatcgatgataattgaattacgtaccgaaagtggcggtttgcatggtcttgacaccag |
201 |
Q |
| |
|
||||||| || | ||||||| |||||||||||||| | |||||| ||| ||||||||||||||||||||| ||||||||||||||||||||| ||| | |
|
|
| T |
45274410 |
tcataaggtatacaattaatcaaataaaataaaaaaagctttgatagataataattgaattacgtaccgaaggtggcggtttgcatggtcttggtaccgg |
45274509 |
T |
|
| Q |
202 |
cagcaaagctctttctaccggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcata |
301 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45274510 |
cagcaaagttctttctaccggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttgggtacagtgatgtattcgtcata |
45274609 |
T |
|
| Q |
302 |
gacaccggccttaacgtagataacatatctgcctttg |
338 |
Q |
| |
|
|||||| |||||||||||||||| ||| ||||||||| |
|
|
| T |
45274610 |
gacaccagccttaacgtagataaaatacctgcctttg |
45274646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 23 - 338
Target Start/End: Original strand, 45293957 - 45294275
Alignment:
| Q |
23 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcata--tactgtttcttcattcataag-tacataatt |
119 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| |||||||||||||||| |||| |||| |
|
|
| T |
45293957 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataaggtacacaatt |
45294056 |
T |
|
| Q |
120 |
aattaaataaaataaaaatgttttgatcgatgataattgaattacgtaccgaaagtggcggtttgcatggtcttgacaccagcagcaaagctctttctac |
219 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| | ||||||| | |
|
|
| T |
45294057 |
tattaaataaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacaccagcagcaccgttctttcttc |
45294156 |
T |
|
| Q |
220 |
cggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgta |
319 |
Q |
| |
|
|||| ||||||||| || | |||||||||||||||||||||||||||||||| || ||||| | |||||||||||| |||||||| || ||||||||||| |
|
|
| T |
45294157 |
cggtaacaatggtctttccggggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtattcatcatagacgccagccttaacgta |
45294256 |
T |
|
| Q |
320 |
gataacatatctgcctttg |
338 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
45294257 |
gatagtatatctgcctttg |
45294275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 23 - 338
Target Start/End: Original strand, 45302917 - 45303235
Alignment:
| Q |
23 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcata--tactgtttcttcattcataag-tacataatt |
119 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| |||||||||||||||| |||| |||| |
|
|
| T |
45302917 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataaggtacacaatt |
45303016 |
T |
|
| Q |
120 |
aattaaataaaataaaaatgttttgatcgatgataattgaattacgtaccgaaagtggcggtttgcatggtcttgacaccagcagcaaagctctttctac |
219 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| | ||||||| | |
|
|
| T |
45303017 |
tattaaataaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacaccagcagcaccgttctttcttc |
45303116 |
T |
|
| Q |
220 |
cggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgta |
319 |
Q |
| |
|
|||| ||||||||| || | |||||||||||||||||||||||||||||||| || ||||| | |||||||||||| |||||||| || ||||||||||| |
|
|
| T |
45303117 |
cggtaacaatggtctttccggggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtattcatcatagacgccagccttaacgta |
45303216 |
T |
|
| Q |
320 |
gataacatatctgcctttg |
338 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
45303217 |
gatagtatatctgcctttg |
45303235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 20 - 338
Target Start/End: Original strand, 45270796 - 45271113
Alignment:
| Q |
20 |
tatatcttttcaatgttagtta-tgttttcttcaaaaatgaattttgagagtgatgccactttttctcatatactgtttcttcattcataag-tacataa |
117 |
Q |
| |
|
|||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| ||| |||| ||| |||| | |||||||||||||| |||| || |
|
|
| T |
45270796 |
tatatcttttcaatgtgagttaatgtttttttcaaaaatgaattttgagagtgatgctactatttcacatctactctctcttcattcataaggtacacaa |
45270895 |
T |
|
| Q |
118 |
ttaattaaataaaataaaaatgttttgatcgatgataattgaattacgtaccgaaagtggcggtttgcatggtcttgacaccagcagcaaagctctttct |
217 |
Q |
| |
|
||||||||||||||||||| | |||||||||| |||| |||||||||||| || ||||| || | | || ||| ||| || | ||||||| |
|
|
| T |
45270896 |
ttaattaaataaaataaaa--gctttgatcgat-ataactgaattacgtacaaaaggtggcagtgttctgtgtgttggtaccggccatttggttctttct |
45270992 |
T |
|
| Q |
218 |
accggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacg |
317 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45270993 |
accagtgacaatggtctttgcagggccatcaccatacataagaatgttaacagcctccttggggacagtgatgtattcgtcatagacaccggccttaacg |
45271092 |
T |
|
| Q |
318 |
tagataacatatctgcctttg |
338 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
45271093 |
tagataacatatctgtctttg |
45271113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 38583244 - 38583289
Alignment:
| Q |
291 |
tattcgtcatagacaccggccttaacgtagataacatatctgcctt |
336 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| |||||||| |||| |
|
|
| T |
38583244 |
tattcgtcatagacaccagccttgacgtagatgacatatctacctt |
38583289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University