View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19414_low_11 (Length: 333)

Name: NF19414_low_11
Description: NF19414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19414_low_11
NF19414_low_11
[»] chr6 (3 HSPs)
chr6 (116-311)||(34864082-34864279)
chr6 (44-123)||(34861003-34861082)
chr6 (257-285)||(7945218-7945246)


Alignment Details
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 116 - 311
Target Start/End: Original strand, 34864082 - 34864279
Alignment:
Q  116 aagaaaaaagaagatccactgcaccattgaacatggttaattgcacttcaagcgtaactaattgagtcacttttttggttattctattgctatatgatta 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34864082 aagaaaaaagaagatccactgcaccattgaacatggttaattgcactttaagcgtaactaattgagtcacttttttggttatgctattgctatatgatta 34864181  T
Q  216 tgctaaaacaaacaaataatagactcat--aatcaaaaacatcatattccactaatcagtcaatgtgcacaacagaagtaccggaaatcaccaagcca 311  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  34864182 tgctaaaacaaacaaataatagagtcataaaatcaaaaacatcatattccactaatcagtcaatgtgcacaacagaagtactggaaattaccaagcca 34864279  T

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Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 44 - 123
Target Start/End: Original strand, 34861003 - 34861082
Alignment:
Q  44 ccattttcagataacaaatcatcccccatccatcaacttcaagatcaatgccacacttacttgatcatcataaagaaaaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34861003 ccattttcagataacaaatcatcccccatccatcaacttcaagatcaatgccacacttacttgatcatcataaagaaaaa 34861082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 285
Target Start/End: Original strand, 7945218 - 7945246
Alignment:
Q  257 atattccactaatcagtcaatgtgcacaa 285  Q
    |||||||||||||||||||||||||||||    
T  7945218 atattccactaatcagtcaatgtgcacaa 7945246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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