View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19414_low_12 (Length: 328)
Name: NF19414_low_12
Description: NF19414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19414_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 16378323 - 16378011
Alignment:
| Q |
1 |
aaaactcagtattacatggatatctaggaaaatgttaaacctacaattataaacaacggagaggcaaacattgaaatgagagaagcacaactcaagcatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16378323 |
aaaactcagtattacatggatatctaggaaaatgttaaacttacaattataaacaacggagaggcaaacattgaaatgagagaagcacaactcaagcatc |
16378224 |
T |
|
| Q |
101 |
caactaaaattcggcgaatagaactatcggttattttcaagctcccgactagtatgatcacaaatatacctaaaactgccagcaataatccaaacattct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16378223 |
caactaaaattcggcgaatagaactatcggttattttcaagctcccgactagtatgatcacaaatatacctaaaactgccagcaataatccaaacattct |
16378124 |
T |
|
| Q |
201 |
cacctatcaaaaagaagtatacaataataacacatcttagtaacacttcaaaatccatgtgacgaaatttatcataaactttccatatatagtattagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16378123 |
cacctatcaaaaagaagtatacaataataacacatcttagtaacacttcaaaatccatgtgacgaaatttatcataaactttccatatatagtattagaa |
16378024 |
T |
|
| Q |
301 |
aaataaccttttt |
313 |
Q |
| |
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||||||||||||| |
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| T |
16378023 |
aaataaccttttt |
16378011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 1195543 - 1195596
Alignment:
| Q |
42 |
tacaattataaacaacggagaggcaaacattgaaatgagagaagcacaactcaa |
95 |
Q |
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| T |
1195543 |
tacaattataaacaatggagaagcaaacattgaaatgagagatgcgcaactcaa |
1195596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 30989923 - 30989976
Alignment:
| Q |
42 |
tacaattataaacaacggagaggcaaacattgaaatgagagaagcacaactcaa |
95 |
Q |
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||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||| |
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| T |
30989923 |
tacaattataaacaatggagaagcaaacatagaaatgagagatgcacaactcaa |
30989976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 14207248 - 14207301
Alignment:
| Q |
42 |
tacaattataaacaacggagaggcaaacattgaaatgagagaagcacaactcaa |
95 |
Q |
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||||||||||||||| ||||| ||||||| |||||||||||| || |||||||| |
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| T |
14207248 |
tacaattataaacaatggagaagcaaacactgaaatgagagatgcgcaactcaa |
14207301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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