View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19414_low_14 (Length: 317)
Name: NF19414_low_14
Description: NF19414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19414_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 65 - 305
Target Start/End: Original strand, 8169285 - 8169528
Alignment:
| Q |
65 |
attcattcaaattgatataatacattgaaaacaact---taacttttgagagaaagtggtctattactacaaacaataactaatcaacccttagcatgag |
161 |
Q |
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| T |
8169285 |
attcattcaaattgatataatacattcaaaacaacaacgtaacttttgagagaaagtggtctattactacaaacaataactaatcaacccttagcatgag |
8169384 |
T |
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| Q |
162 |
gaatttcatcggtagacaggaaactaaaaatacagaaatcttctacattccctttgttataaataccctttctgaacaatccctccctttggaaacctac |
261 |
Q |
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| T |
8169385 |
gaatttcatcggtagacaagaaactaaaaatacagaaatcctctacattccctttgttataaataccctttctgaacaatccctccctttggaaaccaac |
8169484 |
T |
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| Q |
262 |
cttttccaacagtttttgagaagctatgttgtctggacgagtat |
305 |
Q |
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| T |
8169485 |
cttttccaacagtctttgagaagctatgttgtctggacgagtat |
8169528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 295
Target Start/End: Original strand, 8172010 - 8172149
Alignment:
| Q |
156 |
catgaggaatttcatcggtagacaggaaactaaaaatacagaaatcttctacattccctttgttataaataccctttctgaacaatccctccctttggaa |
255 |
Q |
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| T |
8172010 |
catgaggaatttcatcagtagacaagaaactaaaaatatatgcatccacaatattccctttgtgatgaaaaacctttctgaacaatccctccctatggaa |
8172109 |
T |
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| Q |
256 |
acctaccttttccaacagtttttgagaagctatgttgtct |
295 |
Q |
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| T |
8172110 |
gccaactttttccaacaccctttgtgaagccatgttgtct |
8172149 |
T |
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