View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19414_low_15 (Length: 311)

Name: NF19414_low_15
Description: NF19414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19414_low_15
NF19414_low_15
[»] chr6 (5 HSPs)
chr6 (17-301)||(2920904-2921188)
chr6 (164-304)||(18246511-18246651)
chr6 (44-243)||(1034159-1034358)
chr6 (191-242)||(10232769-10232820)
chr6 (203-292)||(32548930-32549018)
[»] chr4 (2 HSPs)
chr4 (164-304)||(16989586-16989726)
chr4 (84-126)||(52116292-52116334)
[»] chr3 (4 HSPs)
chr3 (164-304)||(1259258-1259398)
chr3 (164-304)||(37242546-37242686)
chr3 (191-269)||(53553650-53553728)
chr3 (65-129)||(51042162-51042226)
[»] chr7 (2 HSPs)
chr7 (164-301)||(31234713-31234850)
chr7 (61-269)||(42460101-42460309)
[»] chr5 (1 HSPs)
chr5 (62-257)||(36988907-36989102)
[»] chr2 (4 HSPs)
chr2 (52-271)||(11272399-11272617)
chr2 (203-276)||(33858647-33858720)
chr2 (47-198)||(13016924-13017075)
chr2 (86-243)||(1479471-1479628)
[»] chr1 (4 HSPs)
chr1 (87-269)||(32774127-32774309)
chr1 (62-123)||(19586680-19586741)
chr1 (176-292)||(46594840-46594956)
chr1 (190-232)||(17257069-17257111)
[»] chr8 (6 HSPs)
chr8 (62-257)||(8273714-8273909)
chr8 (63-269)||(37269843-37270048)
chr8 (86-269)||(42941142-42941325)
chr8 (61-269)||(9936273-9936481)
chr8 (176-269)||(36404064-36404157)
chr8 (61-133)||(30503124-30503196)
[»] scaffold0760 (1 HSPs)
scaffold0760 (136-269)||(1722-1855)
[»] scaffold0495 (1 HSPs)
scaffold0495 (191-242)||(9492-9543)


Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 301
Target Start/End: Complemental strand, 2921188 - 2920904
Alignment:
Q  17 tgtttgttggaatggtgaatggaatcgaagaggcataagaaggatttttggttgatttggcacactactatttggtcgatttggaaggaaagaaacgcaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2921188 tgtttgttggaatggtgaatggaatcgaagaggcataagaaggatttttggttgatttggcacactactatttggtcgatttggaaggaaagaaacgcaa 2921089  T
Q  117 ggatcttcaataaccaaaggaaggatgtggaggaaattgtggacgatattaaagcactttcttgggtttggatgttgagtaggttgaagatagcttcttt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2921088 ggatcttcaataaccaaaggaaggatgtggaggaaattgtggacgatattaaagcactttcttgggtttggatgttgagtaggttaaagatagcttcttt 2920989  T
Q  217 cctcttttatgagtggacatggaatccacgagaatgtctaaacagaagatgaacgtggctttctttttgaatctgcctttctgtg 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2920988 cctcttttatgagtggacatggaatccacgagaatgtctaaacagaagatgaacgtggctttctttttgaatctgcctttctgtg 2920904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 164 - 304
Target Start/End: Complemental strand, 18246651 - 18246511
Alignment:
Q  164 attaaagcactttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttttatgagtggacatggaatccacgagaatgtctaaacagaa 263  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  18246651 attaaagcgctttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacgtggaatccacgagaatgtctaaacagaa 18246552  T
Q  264 gatgaacgtggctttctttttgaatctgcctttctgtgctg 304  Q
    |||||||| |||| ||||||||||||||||||| |||||||    
T  18246551 gatgaacgcggctgtctttttgaatctgcctttttgtgctg 18246511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 44 - 243
Target Start/End: Original strand, 1034159 - 1034358
Alignment:
Q  44 aagaggcataagaaggatttttggttgatttggcacactactatttggtcgatttggaaggaaagaaacgcaaggatcttcaataaccaaaggaaggatg 143  Q
    ||||| |||||||| | ||||||||||||||||||| | || ||||||| |||||||||||||||||| |||||||| || |||||| ||  |||||| |    
T  1034159 aagagacataagaaaggtttttggttgatttggcacgcgacaatttggttgatttggaaggaaagaaatgcaaggatttttaataacaaagcgaaggagg 1034258  T
Q  144 tggaggaaattgtggacgatattaaagcactttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttttatgagtggacatggaatcc 243  Q
    | |  || || ||||| || ||||||||  ||||||||||||||| ||||||||| || |||||||| || |||||||||||||||||||| ||||||||    
T  1034259 ttggtgagatagtggatgagattaaagcggtttcttgggtttggacgttgagtagattaaagatagcatcgttcctcttttatgagtggacttggaatcc 1034358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 10232769 - 10232820
Alignment:
Q  191 ttgagtaggttgaagatagcttctttcctcttttatgagtggacatggaatc 242  Q
    ||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  10232769 ttgagtagactgaagatagcttctttcctcttttatgagtggatttggaatc 10232820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 292
Target Start/End: Original strand, 32548930 - 32549018
Alignment:
Q  203 aagatagcttctttcctcttttatgagtggacatggaatccacgagaatgtctaaacagaagatgaacgtggctttctttttgaatctgc 292  Q
    ||||||||||||||| |||||||| ||||||| | ||||||  || |||||||||| |||||||||| |  ||| | |||||||||||||    
T  32548930 aagatagcttctttc-tcttttataagtggacttagaatcctagataatgtctaaatagaagatgaagggtgctgtttttttgaatctgc 32549018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 164 - 304
Target Start/End: Original strand, 16989586 - 16989726
Alignment:
Q  164 attaaagcactttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttttatgagtggacatggaatccacgagaatgtctaaacagaa 263  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||    
T  16989586 attaaagcgctttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacgtggaatccatgagaatgtctaaacagaa 16989685  T
Q  264 gatgaacgtggctttctttttgaatctgcctttctgtgctg 304  Q
    |||||||| |||| ||||||||||||||||||| |||||||    
T  16989686 gatgaacgcggctgtctttttgaatctgcctttttgtgctg 16989726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 126
Target Start/End: Complemental strand, 52116334 - 52116292
Alignment:
Q  84 ctatttggtcgatttggaaggaaagaaacgcaaggatcttcaa 126  Q
    ||||||||  ||||||||||||||||||||||||||| |||||    
T  52116334 ctatttggatgatttggaaggaaagaaacgcaaggattttcaa 52116292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 164 - 304
Target Start/End: Complemental strand, 1259398 - 1259258
Alignment:
Q  164 attaaagcactttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttttatgagtggacatggaatccacgagaatgtctaaacagaa 263  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  1259398 attaaagcgctttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacgtggaatccacgagaatgtctaaacagaa 1259299  T
Q  264 gatgaacgtggctttctttttgaatctgcctttctgtgctg 304  Q
    |||||||  |||| ||||||||||||||||||| |||||||    
T  1259298 gatgaacacggctgtctttttgaatctgcctttttgtgctg 1259258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 164 - 304
Target Start/End: Complemental strand, 37242686 - 37242546
Alignment:
Q  164 attaaagcactttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttttatgagtggacatggaatccacgagaatgtctaaacagaa 263  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  37242686 attaaagcgctttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacgtggaatccacgagaatgtctaaacagaa 37242587  T
Q  264 gatgaacgtggctttctttttgaatctgcctttctgtgctg 304  Q
    |||||||  |||| ||||||||||||||||||| |||||||    
T  37242586 gatgaacacggctgtctttttgaatctgcctttttgtgctg 37242546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 269
Target Start/End: Complemental strand, 53553728 - 53553650
Alignment:
Q  191 ttgagtaggttgaagatagcttctttcctcttttatgagtggacatggaatccacgagaatgtctaaacagaagatgaa 269  Q
    |||||||| || |||||||||||||||||||||||||||||||| ||||||||  |||| || ||||| || |||||||    
T  53553728 ttgagtagattaaagatagcttctttcctcttttatgagtggacttggaatcctagagagtgcctaaataggagatgaa 53553650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 51042162 - 51042226
Alignment:
Q  65 tggttgatttggcacactactatttggtcgatttggaaggaaagaaacgcaaggatcttcaataa 129  Q
    ||||||||||||||| |  | ||||||  |||||||||||||||||| ||||||||||| |||||    
T  51042162 tggttgatttggcacgcatcaatttggatgatttggaaggaaagaaatgcaaggatctttaataa 51042226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 164 - 301
Target Start/End: Complemental strand, 31234850 - 31234713
Alignment:
Q  164 attaaagcactttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttttatgagtggacatggaatccacgagaatgtctaaacagaa 263  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  31234850 attaaagcgctttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacttggaatccacgagaatgtctaaacagaa 31234751  T
Q  264 gatgaacgtggctttctttttgaatctgcctttctgtg 301  Q
    |||||||  | || ||||||||||||||||||| ||||    
T  31234750 gatgaacacgactgtctttttgaatctgcctttttgtg 31234713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 269
Target Start/End: Complemental strand, 42460309 - 42460101
Alignment:
Q  61 tttttggttgatttggcacactactatttggtcgatttggaaggaaagaaacgcaaggatcttcaataaccaaaggaaggatgtggaggaaattgtggac 160  Q
    ||||| ||||||||||||  | |||||||||| |||||||||||||||||| ||  |||| |||||| |  ||  ||||||||| | |||  | |||||     
T  42460309 ttttttgttgatttggcatgccactatttggttgatttggaaggaaagaaatgcccggattttcaatcaaaaagagaaggatgttggggagttagtggat 42460210  T
Q  161 gatattaaagcactttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttttatgagtggacatggaatccacgagaatgtctaaaca 260  Q
    || ||||||||  | |||||||| |||||  |||| ||| | |||||||| || |||||||||||||||| ||| ||||||||  |||| || ||||| |    
T  42460209 gagattaaagcggtgtcttgggtgtggatactgagcaggctaaagatagcatcgttcctcttttatgagtagacttggaatcctagagagtgcctaaata 42460110  T
Q  261 gaagatgaa 269  Q
    |||||||||    
T  42460109 gaagatgaa 42460101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 62 - 257
Target Start/End: Original strand, 36988907 - 36989102
Alignment:
Q  62 ttttggttgatttggcacactactatttggtcgatttggaaggaaagaaacgcaaggatcttcaataaccaaaggaaggatgtggaggaaattgtggacg 161  Q
    |||||||||||||||||  |||||||||||| |||||||||||||||||| || ||||| || ||||| | ||||||| ||||||||||||| ||| |||    
T  36988907 ttttggttgatttggcatgctactatttggttgatttggaaggaaagaaatgcgaggatttttaataatctaaggaagaatgtggaggaaatagtgaacg 36989006  T
Q  162 atattaaagcactttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttttatgagtggacatggaatccacgagaatgtctaa 257  Q
    | || |||||  |||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||  |||| |||||||    
T  36989007 aaatcaaagcggtttcttgggtttggttgttgagtaggttgaagatagcttctttcctcttctataagtggacgtggaatcctagagagtgtctaa 36989102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 52 - 271
Target Start/End: Original strand, 11272399 - 11272617
Alignment:
Q  52 taagaaggatttttggttgatttggcacactactatttggtcgatttggaaggaaagaaacgcaaggatcttcaataaccaaaggaaggatgtggaggaa 151  Q
    ||||||||  |||||||||||||||||  | || ||||||| |||||| ||| ||||||| |||||||| |||||||| ||||| ||||| |||||||||    
T  11272399 taagaaggggttttggttgatttggcatgcaacaatttggttgatttgaaag-aaagaaatgcaaggattttcaataatcaaagaaaggaagtggaggaa 11272497  T
Q  152 attgtggacgatattaaagcactttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttttatgagtggacatggaatccacgagaat 251  Q
    |||||| | || || |||||  ||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||| || |||| |||  |||| |    
T  11272498 attgtgaatgaaatcaaagcggtttcttgggtttggacgttgagtaggttaaagatagcttctttcctcttctatgagtgaacttggattcctagagagt 11272597  T
Q  252 gtctaaacagaagatgaacg 271  Q
    | | ||| ||||||||||||    
T  11272598 gcccaaatagaagatgaacg 11272617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 276
Target Start/End: Complemental strand, 33858720 - 33858647
Alignment:
Q  203 aagatagcttctttcctcttttatgagtggacatggaatccacgagaatgtctaaacagaagatgaacgtggct 276  Q
    |||| |||||| |||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||||    
T  33858720 aagaaagcttccttcctcttatatgagtggacttggaatcctcgagaatgtctaaatagaagatgaacgtggct 33858647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 198
Target Start/End: Complemental strand, 13017075 - 13016924
Alignment:
Q  47 aggcataagaaggatttttggttgatttggcacactactatttggtcgatttggaaggaaagaaacgcaaggatcttcaataaccaaaggaaggatgtgg 146  Q
    ||||||||||| | ||||||||||||||||||  | || |||||||||||||||| ||||||||| || ||||| || || ||| ||  |||||| || |    
T  13017075 aggcataagaaaggtttttggttgatttggcatgcgacaatttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtag 13016976  T
Q  147 aggaaattgtggacgatattaaagcactttcttgggtttggatgttgagtag 198  Q
    ||||| | ||||| || || ||||   ||||||||||||||| |||||||||    
T  13016975 aggaactagtggatgagataaaagtggtttcttgggtttggacgttgagtag 13016924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 86 - 243
Target Start/End: Complemental strand, 1479628 - 1479471
Alignment:
Q  86 atttggtcgatttggaaggaaagaaacgcaaggatcttcaataaccaaaggaaggatgtggaggaaattgtggacgatattaaagcactttcttgggttt 185  Q
    ||||||| || ||||||||||||||| |||||||| ||||  ||| ||  |||||| ||||| ||  | || ||||| || |||||  |||| |||| ||    
T  1479628 atttggttgacttggaaggaaagaaatgcaaggattttcaccaacaaagagaaggaggtggaagaggtagttgacgagatcaaagcggtttcgtgggatt 1479529  T
Q  186 ggatgttgagtaggttgaagatagcttctttcctcttttatgagtggacatggaatcc 243  Q
    ||| | ||||||| || |||||||| || |||||||||||||||||||| ||||||||    
T  1479528 ggacgctgagtagattaaagatagcatcgttcctcttttatgagtggacttggaatcc 1479471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 87 - 269
Target Start/End: Complemental strand, 32774309 - 32774127
Alignment:
Q  87 tttggtcgatttggaaggaaagaaacgcaaggatcttcaataaccaaaggaaggatgtggaggaaattgtggacgatattaaagcactttcttgggtttg 186  Q
    |||||| |||||||||||||||||| |||||||||||||| ||||||| |||||| || |||||  | ||||| || || |||||  |||||||||||||    
T  32774309 tttggttgatttggaaggaaagaaatgcaaggatcttcaacaaccaaacgaaggaggttgaggatttagtggatgagatcaaagcggtttcttgggtttg 32774210  T
Q  187 gatgttgagtaggttgaagatagcttctttcctcttttatgagtggacatggaatccacgagaatgtctaaacagaagatgaa 269  Q
    || ||||||||| || |||||||| || |||||||||||||||||||| ||||||||  |||| || ||||| ||||||||||    
T  32774209 gacgttgagtagattaaagatagcctcattcctcttttatgagtggacttggaatcctagagagtgcctaaatagaagatgaa 32774127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 19586741 - 19586680
Alignment:
Q  62 ttttggttgatttggcacactactatttggtcgatttggaaggaaagaaacgcaaggatctt 123  Q
    ||||||||| |||||||| | || ||||||| |||||||||||||||||| |||||||||||    
T  19586741 ttttggttggtttggcacgcaacgatttggttgatttggaaggaaagaaatgcaaggatctt 19586680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 176 - 292
Target Start/End: Complemental strand, 46594956 - 46594840
Alignment:
Q  176 tcttgggtttggatgttgagtaggttgaagatagcttctttcctcttttatgagtggacatggaatccacgagaatgtctaaacagaagatgaacgtggc 275  Q
    |||||| ||||| | ||||||||  | || |||||||| || |||||||| |||||||| || |||||   ||||||| |||| || ||||||| |||||    
T  46594956 tcttggttttgggtattgagtagacttaacatagcttcctttctcttttacgagtggacttgaaatcctaaagaatgtttaaataggagatgaaagtggc 46594857  T
Q  276 tttctttttgaatctgc 292  Q
    |||||||||| ||||||    
T  46594856 tttctttttggatctgc 46594840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 17257069 - 17257111
Alignment:
Q  190 gttgagtaggttgaagatagcttctttcctcttttatgagtgg 232  Q
    |||||||||||||||||| ||||||| ||||||||| ||||||    
T  17257069 gttgagtaggttgaagattgcttcttgcctcttttacgagtgg 17257111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 62 - 257
Target Start/End: Original strand, 8273714 - 8273909
Alignment:
Q  62 ttttggttgatttggcacactactatttggtcgatttggaaggaaagaaacgcaaggatcttcaataaccaaaggaaggatgtggaggaaattgtggacg 161  Q
    |||||||||||||||||  | || |||||||||||||||||||||||||| |||||||| || || || |||| ||| || ||||||||  | ||||| |    
T  8273714 ttttggttgatttggcatgcgacaatttggtcgatttggaaggaaagaaatgcaaggatttttaacaatcaaatgaaagaagtggaggagttagtggatg 8273813  T
Q  162 atattaaagcactttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttttatgagtggacatggaatccacgagaatgtctaa 257  Q
    | ||||| ||  ||||||||||||||| |  |||||| || |||||||||||||||||||||||||||||||  ||||||||  |||| |||||||    
T  8273814 agattaaggcggtttcttgggtttggacgacgagtagattaaagatagcttctttcctcttttatgagtggatttggaatcctagagagtgtctaa 8273909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 63 - 269
Target Start/End: Complemental strand, 37270048 - 37269843
Alignment:
Q  63 tttggttgatttggcacactactatttggtcgatttggaaggaaagaaacgcaaggatcttcaataaccaaaggaaggatgtggaggaaattgtggacga 162  Q
    ||||| ||||||||||  | || |||||| |||||||||||||| |||| || ||||| || || || |||  |||||||||||| || |||||||| ||    
T  37270048 tttggatgatttggcatgcaacaatttggacgatttggaaggaa-gaaatgcgaggatttttaagaatcaagcgaaggatgtggatgagattgtggagga 37269950  T
Q  163 tattaaagcactttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttttatgagtggacatggaatccacgagaatgtctaaacaga 262  Q
     || ||||   | |||||| ||||| ||||||||||  | ||||||||||| |||||||||||||||||||| ||||||||  |||||||||| || |||    
T  37269949 aatcaaagttatatcttggttttgggtgttgagtagacttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaataga 37269850  T
Q  263 agatgaa 269  Q
    |||||||    
T  37269849 agatgaa 37269843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 86 - 269
Target Start/End: Original strand, 42941142 - 42941325
Alignment:
Q  86 atttggtcgatttggaaggaaagaaacgcaaggatcttcaataaccaaaggaaggatgtggaggaaattgtggacgatattaaagcactttcttgggttt 185  Q
    |||||| ||||||||||||||| ||| || ||||| || || || |||  |||||||||||| || |||||||| || || ||||   | |||||| ||     
T  42941142 atttggacgatttggaaggaaaaaaatgcgaggatttttaagaatcaagcgaaggatgtggatgagattgtggaggaaatcaaagttttatcttggtttg 42941241  T
Q  186 ggatgttgagtaggttgaagatagcttctttcctcttttatgagtggacatggaatccacgagaatgtctaaacagaagatgaa 269  Q
    || ||||||||||  | ||||||||||| |||||||||||||||||||| ||||||||  |||||||||  || ||||||||||    
T  42941242 gggtgttgagtagactaaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcgtaatagaagatgaa 42941325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 269
Target Start/End: Original strand, 9936273 - 9936481
Alignment:
Q  61 tttttggttgatttggcacactactatttggtcgatttggaaggaaagaaacgcaaggatcttcaataaccaaaggaaggatgtggaggaaattgtggac 160  Q
    ||||| ||||||||||||  | |||||||||| |||||||| ||||||||| ||| |||| |||||| || ||  ||||||||| | |||  | |||||     
T  9936273 ttttttgttgatttggcatgccactatttggttgatttggatggaaagaaatgcacggattttcaatcacaaagagaaggatgttggggagttagtggat 9936372  T
Q  161 gatattaaagcactttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttttatgagtggacatggaatccacgagaatgtctaaaca 260  Q
    || ||| ||||  | |||||||| ||||||||||| ||  | |||||||| || |||||||||||||||||||| ||||| ||  || | || ||||| |    
T  9936373 gagattgaagcggtgtcttgggtgtggatgttgagcagactaaagatagcatcgttcctcttttatgagtggacttggaaccctagacagtgcctaaata 9936472  T
Q  261 gaagatgaa 269  Q
    |||||||||    
T  9936473 gaagatgaa 9936481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 269
Target Start/End: Complemental strand, 36404157 - 36404064
Alignment:
Q  176 tcttgggtttggatgttgagtaggttgaagatagcttctttcctcttttatgagtggacatggaatccacgagaatgtctaaacagaagatgaa 269  Q
    |||||| |||||  |||||||||  | ||||||||||| |||||||| || |||||||| ||||||||  |||||||| |||| ||||||||||    
T  36404157 tcttggttttgggcgttgagtagacttaagatagcttccttcctcttctacgagtggacttggaatcctagagaatgtttaaatagaagatgaa 36404064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 133
Target Start/End: Complemental strand, 30503196 - 30503124
Alignment:
Q  61 tttttggttgatttggcacactactatttggtcgatttggaaggaaagaaacgcaaggatcttcaataaccaa 133  Q
    ||||||||||||||| ||  | |||||||||  ||||||||||||||| || || |||||||| || ||||||    
T  30503196 tttttggttgatttgacatgcaactatttggatgatttggaaggaaaggaatgcgaggatctttaagaaccaa 30503124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 136 - 269
Target Start/End: Complemental strand, 1855 - 1722
Alignment:
Q  136 gaaggatgtggaggaaattgtggacgatattaaagcactttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttttatgagtggaca 235  Q
    |||||||||||| || |||||||| || || ||||   | |||||| ||||| ||||||||||  | ||||||||||| ||||||||||||||||||||     
T  1855 gaaggatgtggatgagattgtggaggaaatcaaagttatatcttggttttgggtgttgagtagacttaagatagcttccttcctcttttatgagtggact 1756  T
Q  236 tggaatccacgagaatgtctaaacagaagatgaa 269  Q
    ||||||||  |||||||||| || ||||||||||    
T  1755 tggaatcctagagaatgtcttaatagaagatgaa 1722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 9492 - 9543
Alignment:
Q  191 ttgagtaggttgaagatagcttctttcctcttttatgagtggacatggaatc 242  Q
    ||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  9492 ttgagtagactgaagatagcttctttcctcttttatgagtggatttggaatc 9543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University